Gene detail

Detailed information of FUN_012904-T1 in Dendrogyra cylindrus

Genomic Location: contig_19:2509881...2538241
NR annotation: XP_020600819.1, uncharacterized protein LOC110039974 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_012904-T1

ATGTCGAGTCGAAGAAGGCACCACCATGAAGAGAAGCCAGATCAGTCCGAAGCACACGAGAAGTGTCTTAGCCAAGCAGGACGTTTGCGGGTACGTGAGAGATCCCGTACTggagagaagccttttaaaTGTAAAACTTGTAGCGAGTGTTTCACTTCAACTTGGACATTGCAGGTACATGAAAGATCTCATACCGGAGAGAAGCCATATCAatgcaaaacctgtgacaagtgcTTTACTCGATCAGAAAGTTTGCGGATTCATGTAAGATCTCATACCGGAGAGAAGCCTTATAACTGTAAAACCTGTGGGAAGTGTTTTACTACCCCGGGGGAATTCCGGATACATATAAGGTCACATACTGGAGAAAAGCCATATCAATGCAAAATATGTAACAGACGTTTTAGTCAAGCATGTAATTTGCGGACACACGAAAGATTAATACATTTTGCAGAAAAGCGATATCAGTGCAAAATCTGTGACAAGCGTTTTAGCCAAAAGAGATCTTTGCCACTACATAAGAGATCCCATACTGGAGAAAAGGTTTTTAAATGTAAAACCTGCGACAAGTATTTACTTACAGCGCGGACATTGCGCTTACATGGAAGATCCCACACTGGAGAAAAGCCATATCAATGCAAAATATGTGACAAATGTTTTACACAAGCAGGAAATTTGCGCATCCATGAAAGATGCCATACTGGAGAGAAACCTTTTAAATGTAACGCAtgtgacaagtgttttgttACATCAGGAAATTTGCAGGTACATAAAAGATCACATACCACTAGTGTAATGATTTGCTGGATTTGTCAGGAGGAACTGAAAAGTGCTTCTTTACTCGTTGAACACTATGAAGTAGCTCCACCTGAGATAGTGTCACCAGCTTCTGTTGTGCGAGCATTACCATATTACAGACTGTGGTGTCGAGTCACAGGACAACCTCCCATATACACAGCTCTTATTAGGCAAAAGACGAACAAAATCATAGTACTGGTAAATACAACAGACACTGGAACCATCCAGCTGGATAAAGAAGGAAACTACACTTGTATGGCAACTAGCAAATATGGAACTGACGTGAAAGAGTTCTCAGTGATTTTCACAGATTGCGGTCCTCAGTGTTCTTCCTGGAGTTCCGCATATAAGAATACCCTTTACTGCAATGACCTATCTTCACCCAAGGTCTTAGTGAAATGCACACCGGCAATGACTGATATTATGACTGTAACTTACAGCAATTTTTCTCATCTTCCTGTTGGACTGCTCTCCAGTCTTACAAATCTACGGTCGCTGTATTTCTCTAGGAACGCCATTGAATCATTTGGTGACAGAGTATTTTCGAACCTACAGAATCTGCGAGATGTgGATTTGAATACGAATGCCGTTACATCTTTACCAGATGGAATATTTGCAAACCTTAGAAAAGTATACTCAATGACTCTATCCCATAATAATATTCAAAACCTACCAATCAAGTTATTTGCCTATAACGATAGGTTAGACTATCTaatgCTTTCGGATAATCCTATCAAGGTTATCGAGCCGGAGGCATTTCGACGGACCAATACTTTAACAATgaATCCTGATTCTGATGCAGAAGCTATCCGAGTGCCCAACATCTATTTGTTTACAGGTGCAACCTTAAGGGTCTCTCTCTTGGCCTCTGGATTCGGGCAACTACCACACGCAATAAATTCTAATGCGAGGTCGTTTAAACCATGTCCACTTGGAACATTCTCTAACTCTTCCTCTAGAGGAAAAGATGGATGCATAAAATGCCCACCAGGAGGATTTTACTCAGACAATGTTGGCTATGTGGCCACGGGCTGCAAGAAATGTCCAAACGGTTCTTTTGTTCAATTTGACAAAACACCAGGAACACAAGCTCAAGATTGCAAGTCTTGTCCTGAAGGAACAGATACCGATTTCTTTGCCGGATACCGTGCTTGTAAATGTTTGGAAGGATTTTATCGAACTCATATGTTTGAGAAATGTTACAAATGCGGACAAAGTGGACTGAAATGCCAAGATGATTACGCTTCTTTGAAATCTGGGCATTGGTGGGAATGGCGTAATGAAACACACAAAGACAGCTACAGAGATTTTATTGCGAATCTCTTAACATCTTCACCAGCATTAGATGCATCCAGCGTAAAATTCCCCTATCCCATACCAACGCCTTACAAGTGTCCCACAGAAGAGCCTTGCAAAGGTGGTTTAGACTCCCCTTGTGAAGATGGGTACGAAGGTCCACTCTGTGCAGTTTGCAGCTCGGGATACCATAAACAATTGCAAACCTGCAAAAAATGTTCATCAAAAAAGTGGATGCTGGTACAGTTATTAATCGTTGCAACCATTGTGCTGATAATCGCTGTTCTTTTAATTTGGTCGAGCAAACGAAAGGTCAAGAAGGGGAAAAGACGCCACCTGATAGATGTGTTTTTGTCCAAACTCAAGATTGTTATCAGCTTTTATCAGGTCACGCATGGTTTACTGCAAACGTTCTCATACATAAAATGGCCAGGGTCCTTGCAAGTAGTCGCCAAATATTCAGAAATACTTCAGATGGATGTACTTCAGATAGCACCTGCTCACTGTCTTTTTTCGACATTACACGTGGGTGCTTTTGGAAGCTTGTTTGCGGCAATGACAATCAATGCTTTCGTCATTGGCTTTTCTGTTCTGGCGTATGGACTGAGAAAAGTGATCATCGTAAGAAGTCGGAGTTTGGACGAAGAGGAGAAGTCAAGAAACATCTCAGAAGCGAAGGAGCTTATGTTCAGGAATTTATTTTTCCTCTTGTACGTGACGTACCTCAGCACGTGTTCCAAGACAGCCAATGTCTTGCCACTTAATTGCCGGAGACTTTGCCGAGATGAGAAAGAAGAGTTTTGCTATAAGTACATAAAGGCGGATTACAGCATACTGTGCCAAGGTACAAAGTACAACCATTTGCTTATTGGGGCGTACATTTCTGTTGCCTATGTCGTTGCCCTCCCTGCAATGTCATTTATCGCTATTTGGAGAAACCAAAGAGGTTATAGCATGGAAATGATCACAGGATTGCGGTTCCTCTTTGAAAACTACAAGCCACGTTCGTGGTATTGGGAATTTGTTGAAATGTCCCGTAAAGTCATCCTTACATCTGGCCTGATTCTTGTGGGACAAGAAAGCAGGTCCTACATTGGATTGGCATGGGTCGTCGCCGGAATATATGGAATGCTCTTCTCCTGGATCAAACCTATACAAGACTTGACCGACAACAGATTAATGACGATATCGCTTGCTGTTACTGTTGTCAACCTGGGTGTTGGAGCTGTCAGTAGAATTCCCGCAGAGCAGATTCAATCTACCTCGATTGACCCTTACACTGATGCTGTCTTATTCAAAATATTAATTCTGGGTGCAAACACTTTGGTGATTGGCTTACTTGTTGGCCAGTACGCAGCATTTTTATATCGTTACCTCAAGGAATGGCGTAAAAATCCACGGTGGTCCTTTTCTTGCTGTCTGGCTTTGCTTTTACCTCTGAGCGATTCTCACGGTGAAATCCCTGACTTGATTGAAACGAATCAGCTACAAACAGGACAAATTGACATGCCGACCATTCTCACTGCCGTGGACGAGGAGGCAGAAGATGGTAACAGTCAGCACGCAAAGTATTACAACTCAAAATGTCATCAAGGGACACAAACAGAACTGTGTGCGCCATTATCCAATGATTTTGTGGTCAACAAGTCAATGGAAAAGAAATTGAAGTGA

Transcript

FUN_012904-T1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050589	Family	Ikaros C2H2-type zinc-finger	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24404	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan