Gene detail

Detailed information of FUN_012946-T2 in Dendrogyra cylindrus

Genomic Location: contig_19:2895767...2931621
NR annotation: XP_020611439.1, uncharacterized protein LOC110049928 isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_012946-T2

ATGGCCCGCTCTTCTCCACGGATCACAGctgttttgcttttgtttttatttacaatACCCAAGCTTTCAAAACCTTGCATCCAGCTACTGAACGGCTGGAAACCACTGAAAGTTGGAGAACGCGCAAAACTTGTAAAAGTAGTGTTCATTGGTAAAGTGGTGAACCTCTACACGTTCGACGAAGTCTCGCAAACACACGCCGCAGATTTTGAAGTGTGGAGAATTCTAAAGGGAAGTAAAATCGTGGACGAGGTTTTGGAAATGCACCCGTCGCCACTGGTGAAAGTGTACGGCTTTGGCGAGAAAAGGTTATGTCGTTCGCCCGTTAATCCCGGAGAGGTTCACATGGTTTTTATGGTGTACGAACCGAAGTCTCGCTCGCTCGTGGCACGGTACGAAGACATCTTCGGTGCCACCTCACCGGCCACGGCCAGCAACGAAGACGATGTGTTACATGCGCTGGGTTGGAAACCCTGGTCGAGCTGGAGTCGCTGCAGTAAGAACTGTGGCGAAGGACAACAAACTCGCACAAGAGTGTGCTTTGCTAAAGACTGTGATGGCTGGACGAAGGAAGCAAGAACATGCAACAAGTACGAGTGCTATGgtTTAAAGGACGTAGCCCGACACCTTCGAGAAGAGCAAACTCCGCCCGCCTCTAAGAACGAGAACATTAAAGTGGAAAACGGGCGCACGCGGTCCATACCTGTTTCTAAAGTTTTTCAATACTACAATTACTTCCCCGATGACTTCTCAATTCTCATTACATTTCGCGCCATCACGCTCACAAACGTTTACCTCGTGGCGATGTACGATTACCGCAAATCTCTGAACTTAGGAGTAAGAATAACATCGGATTTGGTGAGCTTTGAGTTCGAGAAAAACTCTGCTTTTCACTATCGTGGGTGGTCAGAGGACTTCGCTGTGAAAGTTCGCAAAGAGCAATGGCATACTCTGGGTATCAGTCTCCATGAACGAAACGTAACGGTCTTTTGGGACTGCAAGAGGATTGGGTCCAGGAACTTGCAAGAAAAGTTTTCCCTTAATCCGGACTCTTCAGGTGAAATTTACGTTGGAAAGCCACTGCTTGTTTCTTCTATTGCAAGATACGAGATTGAGGTGAGCGAGTTGTACTTCGTTCCAGATCCCGGCGCGTCCAGAGATCAATGCGAGGCTCCAACGTTCAAACCACATGTTATCAAGCCCGAATTTGAAGGCAGCGGTGGCGGTGCTCCTGGCATTTATAATAAAGAAGGCTCCGGTACGCCAAATTATGTTGACGATCCTGAAAATGAAGTCGAAATATCGTGGTCTGAGTGGTCGCAATGCTCCAAGACTTGCGGAAAAGGCCAGAGGAAGCGCGTTATGATGTGTGACCTGGAAAACAGCTACGCTGATGAAAACGGTATGCTGATTGAGGAGTGTCAAAAGGCTCTGCAAAATGTGGATACAAAAGAGTGTTTTCTACAAATATGTCCAGCCAAATGTGATCGTCCGTGTTTAAATGGAGGATTTTGCATCAGCCGCAATCACTGTCAATGTCGGCCTGGTTACCATGGTGATGTCTGCGAAAGAGTGGAATGCAAGATCCACTGTCGTAATGGCGGAACTTGCGTGGGACCATACAAGTGTAGCTGTCCCCCCGGATATGGAGGAACTCAGTGCGAGAAAGCGCTGTGCAGCCCACCTTGTCAATATGGCGGACAATGTATAAGACCAAATGTTTGTCACTGTTCACGTGGATTCGTCGCACCTTACTGTAGACCCTCCTGTAGCCCTCCCTGCCTGAATGGCGGCGTCTGCGTTGGACCGAACAAGTGTCGCTGCGCCAAAGGCTTCACGGGAGAATATTGCCAACAAGCTGTGTGCAACCAGCCCTGCATGAATGGCGGCGTGTGCTACCAGCCTGACAAATGCTCTTGCCTTTATGGCTGGCACGGAAAGAGTTGCGAGAAAGCGCGCTGTTTTCCAAACTGTCAAAATGGCGGCACGTGTATAAGACGAAACACTTGCATGTGTTCCCGGGGATATGTTGGTTATTACTGTCAGCACGGTGTTGGTGAGTATTAA

Transcript

FUN_012946-T2

GTGGGCACTGAACTGACTtagtggggaggggaggggataCCACACCATCCTGAACGATGTGCTGCTAAGCATGCATAACTTTCGTGACCTCAAAGCTGATAAAAGTCGGTCGATCGACGCTCACAAAAGCCCGATCATCAACTTAActttttttgtaaacaaaaggcGCGTGTACTCTCCATTCAGATAATGATCGCTTCACCAGTTTATCTCACGGGCTCACGATGAACTTCTCCGATCGGATGAACCGTTGGCAGTGCATGTAAACAACTAAGAATACCAGTAAATGAATGAAATTGACATAATGAAGCTAGTTATCACGGCGCCAAGGTTTCGGAATTTTCACAGATGTAACTGAGACTGGCCGACTTGATTTATTATCGTTTCCGTTGCCACTGGAAGAGGCCCCGCGTGTGTGTTACTTTTTGCTAATTGCGGCGTTAACACGAGAAAATGGCCCGCTCTTCTCCACGGATCACAGctgttttgcttttgtttttatttacaatACCCAAGCTTTCAAAACCTTGCATCCAGCTACTGAACGGCTGGAAACCACTGAAAGTTGGAGAACGCGCAAAACTTGTAAAAGTAGTGTTCATTGGTAAAGTGGTGAACCTCTACACGTTCGACGAAGTCTCGCAAACACACGCCGCAGATTTTGAAGTGTGGAGAATTCTAAAGGGAAGTAAAATCGTGGACGAGGTTTTGGAAATGCACCCGTCGCCACTGGTGAAAGTGTACGGCTTTGGCGAGAAAAGGTTATGTCGTTCGCCCGTTAATCCCGGAGAGGTTCACATGGTTTTTATGGTGTACGAACCGAAGTCTCGCTCGCTCGTGGCACGGTACGAAGACATCTTCGGTGCCACCTCACCGGCCACGGCCAGCAACGAAGACGATGTGTTACATGCGCTGGGTTGGAAACCCTGGTCGAGCTGGAGTCGCTGCAGTAAGAACTGTGGCGAAGGACAACAAACTCGCACAAGAGTGTGCTTTGCTAAAGACTGTGATGGCTGGACGAAGGAAGCAAGAACATGCAACAAGTACGAGTGCTATGgtTTAAAGGACGTAGCCCGACACCTTCGAGAAGAGCAAACTCCGCCCGCCTCTAAGAACGAGAACATTAAAGTGGAAAACGGGCGCACGCGGTCCATACCTGTTTCTAAAGTTTTTCAATACTACAATTACTTCCCCGATGACTTCTCAATTCTCATTACATTTCGCGCCATCACGCTCACAAACGTTTACCTCGTGGCGATGTACGATTACCGCAAATCTCTGAACTTAGGAGTAAGAATAACATCGGATTTGGTGAGCTTTGAGTTCGAGAAAAACTCTGCTTTTCACTATCGTGGGTGGTCAGAGGACTTCGCTGTGAAAGTTCGCAAAGAGCAATGGCATACTCTGGGTATCAGTCTCCATGAACGAAACGTAACGGTCTTTTGGGACTGCAAGAGGATTGGGTCCAGGAACTTGCAAGAAAAGTTTTCCCTTAATCCGGACTCTTCAGGTGAAATTTACGTTGGAAAGCCACTGCTTGTTTCTTCTATTGCAAGATACGAGATTGAGGTGAGCGAGTTGTACTTCGTTCCAGATCCCGGCGCGTCCAGAGATCAATGCGAGGCTCCAACGTTCAAACCACATGTTATCAAGCCCGAATTTGAAGGCAGCGGTGGCGGTGCTCCTGGCATTTATAATAAAGAAGGCTCCGGTACGCCAAATTATGTTGACGATCCTGAAAATGAAGTCGAAATATCGTGGTCTGAGTGGTCGCAATGCTCCAAGACTTGCGGAAAAGGCCAGAGGAAGCGCGTTATGATGTGTGACCTGGAAAACAGCTACGCTGATGAAAACGGTATGCTGATTGAGGAGTGTCAAAAGGCTCTGCAAAATGTGGATACAAAAGAGTGTTTTCTACAAATATGTCCAGCCAAATGTGATCGTCCGTGTTTAAATGGAGGATTTTGCATCAGCCGCAATCACTGTCAATGTCGGCCTGGTTACCATGGTGATGTCTGCGAAAGAGTGGAATGCAAGATCCACTGTCGTAATGGCGGAACTTGCGTGGGACCATACAAGTGTAGCTGTCCCCCCGGATATGGAGGAACTCAGTGCGAGAAAGCGCTGTGCAGCCCACCTTGTCAATATGGCGGACAATGTATAAGACCAAATGTTTGTCACTGTTCACGTGGATTCGTCGCACCTTACTGTAGACCCTCCTGTAGCCCTCCCTGCCTGAATGGCGGCGTCTGCGTTGGACCGAACAAGTGTCGCTGCGCCAAAGGCTTCACGGGAGAATATTGCCAACAAGCTGTGTGCAACCAGCCCTGCATGAATGGCGGCGTGTGCTACCAGCCTGACAAATGCTCTTGCCTTTATGGCTGGCACGGAAAGAGTTGCGAGAAAGCGCGCTGTTTTCCAAACTGTCAAAATGGCGGCACGTGTATAAGACGAAACACTTGCATGTGTTCCCGGGGATATGTTGGTTATTACTGTCAGCACGGTGTTGGTGAGTATTAAGTAAAAGGTCTTGAAAAGCGAAGACGAGGACGCCGGCGGAGAAGAATCAATAAAAAAGACTTATTTGACAATTTCCTGAAGCTCCCGAAGTCAGGAGGAATATAGAATTATCCAGTTTAACTTATGTTTTCGTGAAATtgggaagaaaaaaattcaacatGTTTTGACGTTATAGGCTGCCCTTTGCGCCTATGATTGTAAAATGTTGGAATCAGAATTGAGTTTCAGATAAGCCTCTAAGTACAGCGTCTCGTGGCTTACTTCTTTTCGCAAGTCACGTAATCCTTGCTCCCAGAACGGCTGCGTGACAAGCAAAGGAAGATCAGCAAAGTTGCCGTTTAGTGAAAGATTTGACGCTGTTTTATTGGCAGGCTAAACAAAAAGGATATGCCAGAAATGTTGTCGAAGAGTTGTGAGGAGTTTTCTTCTAAAAACTAAGTTGAGTTTTTCGGAACTTTAAGCTCGGCATAGATATCTTAACTATGAGCGTTTGTACATATCGCCGGTATTtgtaaaaacaattattgaaggTGTTCAACATTGGTTTGAGTTTGATCTGTCTTTGTTTGAACCACTTGATCGCTGATTACGTGGAGGACTGCGAAGAGTAACGTTTTACACACCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C0HL12	Adhesion G protein-coupled receptor B1 OS=Rattus norvegicus OX=10116 GN=Adgrb1 PE=1 SV=1
Q3UHD1	Adhesion G protein-coupled receptor B1 OS=Mus musculus OX=10090 GN=Adgrb1 PE=1 SV=1
O14514	Adhesion G protein-coupled receptor B1 OS=Homo sapiens OX=9606 GN=ADGRB1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002840 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF03146 all species →	NtA	Agrin NtA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR050906 all species →	Family	Notch signaling pathway	Interproscan
IPR004850 all species →	Domain	NtA (N-terminal agrin) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044 all species →	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_012946-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.