Detailed information of FUN_012972-T1 in Siderastrea siderea

Genomic Location: contig_10:5547795...5554127
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00631
all species →		G-gammaGGL domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015898
all species →		DomainG-protein gamma-like domainInterproscan
IPR036284
all species →		Homologous_superfamilyG-protein gamma-like domain superfamilyInterproscan
IPR001770
all species →		FamilyG-protein, gamma subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13809
all species →		GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007186
all species →		Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0005834
all species →		Cellular Componentheterotrimeric G-protein complexInterproscan
GO:0031681
all species →		Molecular FunctionG-protein beta-subunit bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_012972-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_012972-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
200.4Max TPM
12.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 181.17 198.53
unannotated 1 1 159.47 159.47
live coral tissue/skeleton 1 1 200.36 200.36

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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