Gene detail

Detailed information of FUN_013079-T1 in Colpophyllia natans

Genomic Location: contig_19:3679680...3686581
NR annotation: XP_020628532.1, elongation factor 1-alpha [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_013079-T1

CTCTTTCATTCGTAGGCTCTCAGCGAGGCGAAGGAACATCTCGTCAAACCAGAGTAAGAATTTTCAGCGGAAACAATGGTAAAGGAAAAGATTCACATTAACATCGTCGTTATCGGCCACGTAGACTCTGGCAAGTCCACTACAACTGGCCATTTGATCTACAAATGCGGCGGAATCGACAAACGAACAATCGAGAAGTTCGAGAAGGAAGCCCAAGAGATGGGAAAAGGTTCATTCAAGTATGCCTGGGTGTTGGATAAGCTCAAGGCTGAACGTGAACGTGGTATCACTATTGATATCGCCCTCTGGAAATTTGAGACTGAGAAGTACTATGTTACTGTCATTGATGCCCCTGGCCATCGTGACTTTATCAAGAACATGATCACTGGAACATCACAGGCTGACTGTGCCGTGTTAATTGTTGCTGCTGGCACTGGTGAGTTTGAGGCTGGAATCTCCAAAAATGGCCAAACCCGTGAGCATGCTCTGTTGGCGTTTACTCTGGGAGTGAAGCAGCTTATTGTTGGTGTTAACAAGATGGACAGCACTGAACCAAATTATAGTGAGACTCGTTTTAAAGAAATTGAGAAGGAAGTGTCAACATATGTCAAGAAAGTTGGTTACAACCCCAAGGCTGTTGCCTTTGTTCCCATTTCTGGTTGGCACGGAGACAACATGCTGGAACCAAGTGATAAGATGCCCTGGTTCAAAGGATGGTCCGTTGAGAGAAAAGAGGGCAATGCTAGTGGTAAGACACTCTTCAATGCCCTGGACAGCATTCTTCCACCAGAGCGTCCAGTAAAGAAACCTCTGCGATTGCCATTACAGGATGTTTACAAGATTGGCGGTATTGGAACTGTGCCTGTTGGAAGAGTGGAAACTGGAATCTTGAAACCAGGTGCCATTGTTACAATTTCTCCTGCTAATGTAACAACTGAGGTCAAATCTGTTGAGATGCACCATGAAGCTCTTTCAGAAGCCCTGCCTGGGGACAATGTTGGATTCAATGTTAAGAACGTGTCAGTGAAGGAACTAAAACGTGGCTTTGTCGCTGGAGACAGCAAGAATGATCCACCAAAGGAAGCCACAAGTTTTAAAGCACAGGTTATTGTCCTCAACCATCCAGGTGAAATTCATAATGGCTATGCTCCTGTGCTGGATTGCCACACTGCCCATATTGCCTGCAAGTTTAATGAACTGCTTGAGAAGATTGACCGTCGTAGTGGGAAGAAGATAGAGGATAATCCAAAGAGTGTCAAATCAGGTGATGCTGCCATCGTCTCGCTGGTACCCAGCAAGAAAATGTGTGTTGAGGCATTCAGCGAATATCCCCCCCTTGGTCGCTTTGCTGTCCGAGATATGAAGCAGACTGTAGCTGTTGGTGTTATCAAGCACGTGGAAAAAGCTGAGGCTGAAGGCAAGACTACCAAGGCTGCTGCAAAGGCCCaaaagaaaaagtgaaattCTGTGCACAATTTAAATTCAAAGAGACTCCGCTTACAAGTCAATCATGCTGTTGTAGTAGAATGGCTTCTTTGCTATTTGTTCCATCGCAAGTCTGTCAGGAGGCGGAGACAGCTGTGCTGTTACCTTAATTTCTGAACGATAAGTGTACTTggtagaaataaaataaaaaaatgttacgTTATGTACAGAATTGTGATTGGACTGAGTAATAGGCTTCTCTCCTTACTCGTGGGGAAAAGAAGCtacttatttgtttattttccttgttGCTGGGTTCGTCGCACAAAAGGTCTACAGTATGTTAAAAAGTGGGGTCGGTGAACAGTTGGGAAATTTTACTTCCTCTTGGACATTTTGAATCAaagtcagggaaattgcaataTTTCACTGGAAGTGATAATGCCATAAAAGGTTGGAAGAATCATTTCAGATCACTGATCTCGACACCAGCCCTGCATGTTCGCAGCAAATCATAATCGAAAGCCTAACCGTTGACCTAAGACCCCCAAGACCTGCATTACTGCATACAAATAAGGCACTGCAAAGGCGTAAACCGTCTACATATTCTGCGCTTGCGTGAAAAATGGCTGAACGCTTTCTTGAACTGTCGGATAGTAattaaaatatgaaaagaaacttgaaataaatacttaaataaCTGAACTCGGTAATTGCAAAATATTCTAATTTGCCAGTGTCTCGCAGATCAGTATCAGTAACTTGCCTCAGGCGTCGTCGAGTAATTATCTGATTGCTCGCTTCTGTCAACTACGAGAGTTTGATTAAACTTCGTACAATAACTTAATTATTGATACTTTTCTATCGTAAACTCAAATATATAGTCAACTGACCCTCGGGGAAATGCGCTGTGGCCGCGGTCGAGTAACAAGAAACTAAACGTTCTTTATGTTTGCATGTTTCTAACTACCCACGAACAAAGCAGACGCCAAcgggcaacctcgttcccgggGCTTTTCCCTTGGAACGAGGCTGGCAAACGGCGAAAGGATAAGGGTTGCATTATATCGCAGTGCAATCCAACGGATCACCATACAGTAAGTTTTTTAACTCAGCTGCTAGACAAATACAACGTATAAATCATAGTTTCATTACCATCTGAAAATTCTGTGCGGTCGTGGGGACCTATTCTGAAATTTCCTCCATAAATCGGGTTTTGAACTTCCGTTGAACTTCGTCAATCATGTAAAAGATGTGCAAGCTATGATTAATtacaaattttgtcaaagtttCACATCTAAAGCGCTACTGTATGTATTTTCTTTGAAACAATATC

Protein

Uniprot

Uniprot term	Description
Q9YIC0	Elongation factor 1-alpha OS=Oryzias latipes OX=8090 GN=eef1a PE=2 SV=1
P29520	Elongation factor 1-alpha OS=Bombyx mori OX=7091 PE=2 SV=1
P05303	Elongation factor 1-alpha 2 OS=Drosophila melanogaster OX=7227 GN=eEF1alpha2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03143	GTP_EFTU_D3	Elongation factor Tu C-terminal domain	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR009001	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR050100	Family	Translation factor GTPase superfamily members	Interproscan
IPR004160	Domain	Translation elongation factor EFTu/EF1A, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004539	Family	Translation elongation factor EF1A, eukaryotic/archaeal	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23115	TRANSLATION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03231	EEF1A; elongation factor 1-alpha	-	Exosome	ko04147	deepkoala