Gene detail

Detailed information of FUN_013095-T2 in Dendrogyra cylindrus

Genomic Location: contig_19:4902655...4923335
NR annotation: KAJ7372174.1, carbohydrate binding [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_013095-T2

ATGGTTAATTTGTTCTTATTTGTGGCCTTTTTTTGTGTGGGTGCAGCAGCGTTTGAGTGCAAGTTCGAAGAAGCTGCGAAGGATGAAGAGAAACTACAAGTCCATCTTGTTCCGCATACGCATGACGACGTTGGTTGGTTGAAAACTGTGGACGAGTACTATTATGGAGCTAATAATTCCATTCAACATGGTGGGGTGCAATATATTTTAGACTCTGTTATTTCTCAGTTAAGTGCAGATCGATCAAAGCGTAAGCGATTTATTTACGTGGAAATTGCTTTCTTCGAGCGCTGGTGGAACGAGCAAAAAAACGACACGCAAACGGAAGTGAGGAAACTCGTGAGAGAGAAAAGACTGGAGTTTATAAACGCTGGTTGGTGTATGAACGACGAAGCGGCGGCACATTATAATGCGATCATTGATCAAATGACTTATGGATTGAACTTCGTGGAAGAGACATTTGGATCTGATGCAAGACCTCGGATAGCTTGGCATATTGATCCGTTTGGTCACTCGAACGAACAGGCCTCAATCTTTGCACAGATGTCATTCGATGGATTCTTCTTGGGAAGAATCGACTACCAGGACAAAGATCTTCGCCTTGAGCAGCAAAGAATGGAGCTGGTCTGGAGAGGAAGCAGAAATCTTGGACAAGATTCTGACATTTTTGCCGGGGTCCTCCACAACCTTTATTTCCCTCCGCCTGGATTTTGTTACGACCAATCATGTAATAATACTCCGCCAATACAAGACGATCCGAACCTATTTGACTACAACGTCAAAGAAATAGTGAATAGATTTGTATTCGAAGCATGCGCACAAGCATCGCAGTATAAAACAAATCACATCATGATGACCATGGGTGGGGATTTCCAGTACGAGAATGCCATCACGTGGTACAAGAATTTGGACAAGCTTATCAATTATGTGAATGGAgaTGGCCGTGTGCATGCATTTTACTCTACGCCAACCACTTATTTAGATGCTCTGCACGAAGCTAACCAGACTTGGGAATTGAAAACTGATGACTTCTTCCCATATGCAGACTGTCCGCACTGTTATTGGACTGGTTATTTCACTAGCAGGCCAGCACTGAAGCGATATGTCAGATATAACAACAATTTGCTTCAGGTCTGTAAGCAACTGGAGTTGATAAATGGCCCAGCAAATGGTCCAACGTCTGATACTCTGCGCAGAGCAGTGGGTGTGGCACAGCACCATGACGCTGTCAGTGGTACATCAAAACAGCACGTGGCTGATGACTATGCCAAGCGACTCGCTATCGGTGCTGCAGAGTGCCAGGAATTGGTTGTTGACGTGCTTGGAAAATTCGCTGTGAAAAACCCTGCAACCAAACATCCTGCATTGGCATTCTGCGACCACCTCAACATCAGTGTCTGCTCGGTGACTGAGCAGAGCAAATCCTTCACCGTCACAATCTATAATCCCATTGTTCGTGACGTCACCAGTGTTGTTCGCCTGCCAGTCGCGATGGCTTCAATGGCTGTGTTTGGCCCACAAGGCACCCCAGTTGAAAGCCAAGTGCTGCCGATCTCTAATGCTACCAAAGAGCTGCGTCaaaatcagaaccagaaacaGAGCCATTCATCATACGAGCTTGTTTTTACCGCCAAAGTCCCTGCCTTAGGATTTGCTACTTACTTCGTTAACACAACCAAGTCACCGTCTAGACTGCAGAAGAAGTTCTTCCGACCGGTTCCTGAGCACGCCTACAAAGACTCCGATGAGCTCTCCATCGAAAATGAATTTATCAAACTTTCCTTCTCGCAGGACACGGGGCATTTGACAAGCATGACTGATTTGAGTTCCAAAACCACCGTCGCATTGAGGCAAGCATTCTACTGGTACAACGGTAGCATGGGAAACGATAGCAGTAAACAGCCCTCCGGCGCGTACATCTTCAGACCCAACAGTAGCCATGCGAATCTGATCTCCATGGGCAGCAGGGGAGAGATCTTCAAGGGTCCCGTGGTACAGGAGGTACGCCAGGTGATCTCTCCGTTCATCAGTCAGGTGATCAGGCTTAACGCTGGCCAGCGGCATGCAGAGTTTGAGTACACTGTGGGGCCGATACCAATAGGCGATCACTGGGGAAAGGAAATAATCACCCGGTTTGACACAGATATCAAGTCCAACCAGCTCTTCTACACTGACGCCAATGGGAGAGAAATGCAGGAACGTAAGAGGAACTACCGACCGACGTGGAAATTGAACATCACCGAGCCAGTTGCTGGGAATTATTACCCAGTAAACAGTCGAATGTACATCAAGGATAGCGACAAGCAACTGACAATCCTGACTGACAGGTCCCTGGGAGGGTCCAGCATGAAAGATGGCTCGATGGAAATCATGCTGCACCGTCGGCTTCTTGTTGATGACAAAAGAGGAGTGGGCGAGCCGCTCAACGAGACAGGTATCCTCGGCAAAGGTTTAATCGTCCGCGGGAAGTTGTGTCTCACTCTTGCGCCGCCCAAGTCTTCTGCTGCTCTTCATCGTGAACTCGGCGAGAAGCTCCTTCTGGAACCAGTGTTGACCTTTGCACCCaccagcctcactttcaagcaGTGGACAAGCCAGTTTAACTCGTTGCACAGCGGTCTCACTCGTGAACTGCCCGCCAATGTTCACTTGCTGACACTGGAGACGATGCAGGATACCGCGTTGATTCGCGTGGAGCATCAGTACGAGGCTGGTGAAGACCCCAAGCTCTCGCAACCTGTCAACATTTCACTCGCGGGTCTTTTCACCGACTTTGACATCGAGTCCATGACTGAAACAAACCTGGCTGCCAATCAACTGTTGAAGGATAAACGGCCACTCCACTGGAATATCAAATCGAGGAAAAGCGTAGACGAAAACAAGATGATGAAGAAGAGGGTGTCCCGGGCGGAATCTGATTTGAACGTGGACCTCACCCCAATGCAAATCCGTACCTTCAAAGCTGTCATCAAGCGTCACGGAATTTCTCGATATAACAAGTACTAA

Transcript

FUN_013095-T2

GGGACTATCTCGTGACTTTATCATGACATACCGGAAGAGGAATCGTTTAAATTGCTGGGGAAACTAACATTTTGACGGAAACCAATTATACGGAGTGGTTTTCCTTTCTCTTGAGCAGAAATGGTTAATTTGTTCTTATTTGTGGCCTTTTTTTGTGTGGGTGCAGCAGCGTTTGAGTGCAAGTTCGAAGAAGCTGCGAAGGATGAAGAGAAACTACAAGTCCATCTTGTTCCGCATACGCATGACGACGTTGGTTGGTTGAAAACTGTGGACGAGTACTATTATGGAGCTAATAATTCCATTCAACATGGTGGGGTGCAATATATTTTAGACTCTGTTATTTCTCAGTTAAGTGCAGATCGATCAAAGCGTAAGCGATTTATTTACGTGGAAATTGCTTTCTTCGAGCGCTGGTGGAACGAGCAAAAAAACGACACGCAAACGGAAGTGAGGAAACTCGTGAGAGAGAAAAGACTGGAGTTTATAAACGCTGGTTGGTGTATGAACGACGAAGCGGCGGCACATTATAATGCGATCATTGATCAAATGACTTATGGATTGAACTTCGTGGAAGAGACATTTGGATCTGATGCAAGACCTCGGATAGCTTGGCATATTGATCCGTTTGGTCACTCGAACGAACAGGCCTCAATCTTTGCACAGATGTCATTCGATGGATTCTTCTTGGGAAGAATCGACTACCAGGACAAAGATCTTCGCCTTGAGCAGCAAAGAATGGAGCTGGTCTGGAGAGGAAGCAGAAATCTTGGACAAGATTCTGACATTTTTGCCGGGGTCCTCCACAACCTTTATTTCCCTCCGCCTGGATTTTGTTACGACCAATCATGTAATAATACTCCGCCAATACAAGACGATCCGAACCTATTTGACTACAACGTCAAAGAAATAGTGAATAGATTTGTATTCGAAGCATGCGCACAAGCATCGCAGTATAAAACAAATCACATCATGATGACCATGGGTGGGGATTTCCAGTACGAGAATGCCATCACGTGGTACAAGAATTTGGACAAGCTTATCAATTATGTGAATGGAgaTGGCCGTGTGCATGCATTTTACTCTACGCCAACCACTTATTTAGATGCTCTGCACGAAGCTAACCAGACTTGGGAATTGAAAACTGATGACTTCTTCCCATATGCAGACTGTCCGCACTGTTATTGGACTGGTTATTTCACTAGCAGGCCAGCACTGAAGCGATATGTCAGATATAACAACAATTTGCTTCAGGTCTGTAAGCAACTGGAGTTGATAAATGGCCCAGCAAATGGTCCAACGTCTGATACTCTGCGCAGAGCAGTGGGTGTGGCACAGCACCATGACGCTGTCAGTGGTACATCAAAACAGCACGTGGCTGATGACTATGCCAAGCGACTCGCTATCGGTGCTGCAGAGTGCCAGGAATTGGTTGTTGACGTGCTTGGAAAATTCGCTGTGAAAAACCCTGCAACCAAACATCCTGCATTGGCATTCTGCGACCACCTCAACATCAGTGTCTGCTCGGTGACTGAGCAGAGCAAATCCTTCACCGTCACAATCTATAATCCCATTGTTCGTGACGTCACCAGTGTTGTTCGCCTGCCAGTCGCGATGGCTTCAATGGCTGTGTTTGGCCCACAAGGCACCCCAGTTGAAAGCCAAGTGCTGCCGATCTCTAATGCTACCAAAGAGCTGCGTCaaaatcagaaccagaaacaGAGCCATTCATCATACGAGCTTGTTTTTACCGCCAAAGTCCCTGCCTTAGGATTTGCTACTTACTTCGTTAACACAACCAAGTCACCGTCTAGACTGCAGAAGAAGTTCTTCCGACCGGTTCCTGAGCACGCCTACAAAGACTCCGATGAGCTCTCCATCGAAAATGAATTTATCAAACTTTCCTTCTCGCAGGACACGGGGCATTTGACAAGCATGACTGATTTGAGTTCCAAAACCACCGTCGCATTGAGGCAAGCATTCTACTGGTACAACGGTAGCATGGGAAACGATAGCAGTAAACAGCCCTCCGGCGCGTACATCTTCAGACCCAACAGTAGCCATGCGAATCTGATCTCCATGGGCAGCAGGGGAGAGATCTTCAAGGGTCCCGTGGTACAGGAGGTACGCCAGGTGATCTCTCCGTTCATCAGTCAGGTGATCAGGCTTAACGCTGGCCAGCGGCATGCAGAGTTTGAGTACACTGTGGGGCCGATACCAATAGGCGATCACTGGGGAAAGGAAATAATCACCCGGTTTGACACAGATATCAAGTCCAACCAGCTCTTCTACACTGACGCCAATGGGAGAGAAATGCAGGAACGTAAGAGGAACTACCGACCGACGTGGAAATTGAACATCACCGAGCCAGTTGCTGGGAATTATTACCCAGTAAACAGTCGAATGTACATCAAGGATAGCGACAAGCAACTGACAATCCTGACTGACAGGTCCCTGGGAGGGTCCAGCATGAAAGATGGCTCGATGGAAATCATGCTGCACCGTCGGCTTCTTGTTGATGACAAAAGAGGAGTGGGCGAGCCGCTCAACGAGACAGGTATCCTCGGCAAAGGTTTAATCGTCCGCGGGAAGTTGTGTCTCACTCTTGCGCCGCCCAAGTCTTCTGCTGCTCTTCATCGTGAACTCGGCGAGAAGCTCCTTCTGGAACCAGTGTTGACCTTTGCACCCaccagcctcactttcaagcaGTGGACAAGCCAGTTTAACTCGTTGCACAGCGGTCTCACTCGTGAACTGCCCGCCAATGTTCACTTGCTGACACTGGAGACGATGCAGGATACCGCGTTGATTCGCGTGGAGCATCAGTACGAGGCTGGTGAAGACCCCAAGCTCTCGCAACCTGTCAACATTTCACTCGCGGGTCTTTTCACCGACTTTGACATCGAGTCCATGACTGAAACAAACCTGGCTGCCAATCAACTGTTGAAGGATAAACGGCCACTCCACTGGAATATCAAATCGAGGAAAAGCGTAGACGAAAACAAGATGATGAAGAAGAGGGTGTCCCGGGCGGAATCTGATTTGAACGTGGACCTCACCCCAATGCAAATCCGTACCTTCAAAGCTGTCATCAAGCGTCACGGAATTTCTCGATATAACAAGTACTAAGGACACCTCAATGTTTCACAGCCGTTACTTGgattgtcacgcaacgcttgtCAGGGAGAAGTactgcgtgacgacccaaataatgGCTGCGAAGAAGACTCACCtaaataaaaatatagtttGAAAACAATTAAGCAAAATCAGGTTGATTGTTAAAGAAGCAATGTCAcagtgttttagtcatttttctgattactttgaaattggaagaaaccttaaaataatagttttctaacatagaaaaacaccgacggaataataaaaacgcgaaaataaccaaggatggtttcaactgacaaaGATTACGACCaattacaatcaacaaacttgaaaacacttgccagttttttcaagatgcattgtccgtgacgtagctcctttaaacagGCAAACTAATTGCTACTAGCACAGGCTAGGTCACCCTAGTTTAGAAAACCCTGCTTCTGGTTTGAAAAACCACCTTATTACACGAAATTTCAGGATTTTAAAGAGCAAAATTGGAAATTTTGTTTAAAGTGCTACTTAAACGAAgtttttgtatccttttttatTCGCCCAATTTATAGTTTCAAACATGGGTTACTGTCATTGTGATTGaaatagagcgattttcacttgTCGAGAGCAATTCGCGTTTACTTTGGGTTTGCATTACTGCGCTTAGTGATTGGCTTGAAAAACTCGGGCcacttctcgaccaatcagaagtaaaaccaaagccaGTGGTGACTGGCTCAcaaatgttttcccgcgctttacgcCCTCTTCAAGCATTTGCttccagttttgattggttcactggattgtatGCTCCCTTTgcgattggccagagtgattactttggctTCGGTTTTACGACATCCTAAAGTCGCTCAAATGTCACCTTATTTATACAGGTTGGGAGCAAGTTCTAGCCTGCAGTGCAAGTTTATATATTAGGTACATGTGCTGAATAATCCTTTCCGGGCGCCATCTTGGATAAGAAAACGCGCAGAGCGTTTGAGCGAGTCAAAAGTGACCCCAAGGATAGGGCGAGCCAGCCCTCTACCCGTCAAGCATCCAAGAGGGCGGCATAAACACGATCGAATTTAATCAAGCGTTCGGACGACAAAATAACGCCTGTACTGTAGGCTAGGCAAGTTCTTGTCTGGCATTCTTTAAAATTCATAATATAAAACGTTTGATTTAAATTGGGGTTTTCGTAAGCAATATTTCAGTGTAAGAGCAGcgacaataatttttttttgtaacattGGTAGAGCAAGACAGTTTCAGTACATAGGCAGCCGTTTAATAACGACTGTTGTAAAAATCTAACCAAAGAATTAATCAGTAAGGCCGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VHC8	Lysosomal alpha-mannosidase OS=Cavia porcellus OX=10141 GN=MAN2B1 PE=1 SV=1
Q60HE9	Lysosomal alpha-mannosidase OS=Macaca fascicularis OX=9541 GN=MAN2B1 PE=2 SV=1
O00754	Lysosomal alpha-mannosidase OS=Homo sapiens OX=9606 GN=MAN2B1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001985 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21260 all species →	Laman-like_dom	Lysosomal alpha-mannosidase-like, central domain	Domain	Interproscan
PF07748 all species →	Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	Domain	Interproscan
PF09261 all species →	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028995 all species →	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan
IPR048534 all species →	Domain	Lysosomal alpha-mannosidase-like, central domain	Interproscan
IPR011682 all species →	Domain	Glycosyl hydrolase family 38, C-terminal	Interproscan
IPR015341 all species →	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR050843 all species →	Family	Glycosyl Hydrolase Family 38	Interproscan
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan
IPR037094 all species →	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11607 all species →	ALPHA-MANNOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12311	MAN2B1, LAMAN; lysosomal alpha-mannosidase	EC:3.2.1.24	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Dendrogyra cylindrus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Dendrogyra cylindrus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →