Gene detail

Detailed information of FUN_013110-T1 in Colpophyllia natans

Genomic Location: contig_19:4109819...4152397
NR annotation: XP_020628521.1, pancreatic secretory granule membrane major glycoprotein GP2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_013110-T1

ATGGCCGAGAAACAAGAACACCCATCTGCTCGTGATTTTAACAGCAGTTCATCTAAGCTTGTTTGTCCATTGTCGTTAGTATCTTTATTGATATGTACTGCTGCATTGGTGCGCGTTGAGATTATAAACCAGCGCGTTCACGATGTTGAAGATCTTATGGCGGACGCACGACAGAATAAGAACGTGGTCAAGGTTTTCACCGATGCAACAAGTTTCAAACGCTCTGAAAGGGTCGAGTCTGTTGAAAGATTTGATCCCACGATCACTAAAGAGAGGGGAGATGAGACAGAAGTTCATACCGGAAGAACCCGCCGGTTTTCATCTGAAGCTGGCACAAAACAAGATCAGCTCACTATGGAGTCAGTCAGAAGTGAGATAAACAAGACATTGAACTCTCTGACGTCACGATCATTCTGTTCACCCAAACAACAAATCTGCGTGCAAGGACCGCCAGGAATACAGGGTCCTAAGGGATCACGTGGTAGAAGAGGACCGCGTGGAGTCACGGGAAGGAAAGGGTCAAGTGGCAGCAGGGGAAAACAAGGCCCGCATGGAAAGCAGGGAGTTAAGGGGCCACCAGGTCAAAAGGGGGACAGGGCACCATGGGACCACCAGGGAAATCAGGGAATTATGGGGCCTCCGGGTCAAAAGGGGCAACAGGGAATTATGGGGCCACCTGGTTTAATTGGGGAAAAGGGAATAATAGGGCCGTCTGGTCCTAAAGGAAGTCAGGGAAATATAGGGCAAACGGGTCCAAAGGGAAATAAGGGAATTATGGGGGCCCGGGGTCCGAAGGGAAATCAGGGATTTATGGGGCCATCGGGGATAACGGGAAAACAAGGATATATAGGGCCACCGGGTCCAAAGGGAAATAAGGGAATTATGGGGTCACCAGGCCGAACTGGGGAACAGGGTATTTCAGGGCCACCGGGTCCAAAAGGAAAACAAGGAATTATGGGTCCAAAGGGAAAACAGGGAATCGTAGGAGTCCCGGGTCCCCGGGGGATCACCGGCGCAAAGGGAGAATCCGGGAATTATTTCTCAACTCCCACAATGGCGATCGTCCCGAAGAAACAATCCATCACGCTGAGTCAAAGTGCAGTGTTTCAGTGTTCGGTCGTTGGAAATCCGAAGCCGACTGTCACGTGGCTAGGAAAGAGAGGCACTCCCTTAAGAAGTCAAGATGGCAGATTAGAAGTACGTCACTTGACAGTTGAAGACGCTGTAGAATACACTTGTATTGGAAGAAATTTTCTGGGCATTACAAGTCAGACTGCAGTTTTGACTGTTAAAGAACCTGTGGAATGTACAAGCTACTCAAGTCTGACCAGCGGTGACCGGAAAACTACGTTCATCACTAAGTCCCATTTGTGTGACAAAAACCTCAAAGGTTGGTATCGCTTTCAAGGAGCTGCGGGAACTAGAATGCCTACTTCATGTCCACCTGTAAACAGATGTAACACTTATGCAACCGGCTGGTTAAATGGTGGACATCCTACAGTGGCTGATGGCAAAGTAACCAGGCAGGTCTGCTTTCACTGGAATCCAAACTGTTGTAACTCGTTAACCAACATTGAAGTGAGAAACTGCGGCTCTTTCTATGTTTACTACTTCACTGGTACACCGCACTGTATCGTACGCTACTGTGGCAGTGACTAATTATTTTCATCATAAATGTTGTTTACTTCCGGTCGTTGAAAAAGATACATTTTTTGTTGATGAATAATCCTCTTGTAAAATAACCTTTTTATATCCTTGCCGTGTAAAGTTATTGGTAACAACATGCAAGCACGATTGAAGGAGGCGAGTTCATGAGTTGACCTTGGTTTATGCTGACTATTATGTTGATGTCATGTTTTACCGATGCTTtgttcaattaaaaaatatgcCTAACCTCCCGATTTGTCATGGCGTGTAAATATGCGAGGCTTCACAAGTATTTGTCGCAAACTCGTTAAAATATAGGAAACCAAACTTgttaatttttacaaagaaatgcaaTTAGCTAACCATAATCGATTTTCCTGGAAGAGCACTGCATAGTGACACTGGATTCGTTATATTTTATTACTATATTGTATCAATTATGAAACTTACGTTATTGAAAACTATGAAGAGAGCTATTAATAAATTGCTGTGGTAACAATAAATGGGGACA

Protein

Uniprot

Uniprot term	Description
P25291	Pancreatic secretory granule membrane major glycoprotein GP2 OS=Canis lupus familiaris OX=9615 GN=GP2 PE=1 SV=1
P19218	Pancreatic secretory granule membrane major glycoprotein GP2 OS=Rattus norvegicus OX=10116 GN=Gp2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan