Gene detail

Detailed information of FUN_013132-T1 in Acropora pulchra

Genomic Location: ptg000008l:19886413...19889247
NR annotation: XP_015751919.1, PREDICTED: matrix metalloproteinase-9-like [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O62806	Collagenase 3 OS=Oryctolagus cuniculus OX=9986 GN=MMP13 PE=2 SV=1
O18927	Collagenase 3 OS=Equus caballus OX=9796 GN=MMP13 PE=2 SV=1
O77656	Collagenase 3 OS=Bos taurus OX=9913 GN=MMP13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01471 all species →	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan
PF00413 all species →	Peptidase_M10	Matrixin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR002477 all species →	Domain	Peptidoglycan binding-like	Interproscan
IPR001818 all species →	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR021190 all species →	Family	Peptidase M10A	Interproscan
IPR033739 all species →	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201 all species →	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0030574 all species →	Biological Process	collagen catabolic process	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_013132-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.