Gene detail

Detailed information of FUN_013133-T1 in Colpophyllia natans

Genomic Location: contig_19:4334287...4343847
NR annotation: KAJ7383086.1, hypothetical protein OS493_030973 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_013133-T1

Transcript

FUN_013133-T1

ATGGCCGAGAAACAAGAACACCAACCTGCTCTATCTTTATTGATCTGTACCGCTACTTTGGTGCGCGTTGAGATTATAAACCAGCGAGTTCACGATGTTGAAGATCTTGTGGTAGACGTACAGCAAACTCAGAACGTGATCAAGGTTTCAACTGATGAAGCAAACGTGAAACGATACGAACGAGTCGAGTCTGTTGGAGAATCTGATCACAAGAGGAGAAATGAGACAGAAGATCATCATACCGAAAGAACCCGCCGGTTTTTATCTAAAGCTGGCACAATACCTAACGAGCTTACTATGGAGTCTGTCAGAAGTGAGATAAACAAGACATTAAACTCTCTGACGTTACGATCATTCTGTTCACCTAAACGACAAATTTGCGTGCAAGGACCGCCGGGAAAGCAGGGTCCTAAGGGATCACGTGGTAGGAGAGGGCCACGTGGAGTCACGGGAAGGAAAGGGTCAAGTGGAAGCAAAGGACAGAACGGCCCACGTGGAGAGCAGGGAATTGCGGGGCCACCGGGTGAAAGGGGGAAACAGGGAATTAAGGGGCCACCAGGTTCCAAGGGGGAACAGGGAGTTACGGGGCCATCGGGTCCTAGGGGAGGAGAGGGAATCAAGGGAGTGCGTGGTCCCAAGGGGGAACAGGGAATTAAGGGGCCACCGGGTGCAAAAGGGAAACAGGGAGTTACGGGGCCATCGGGTCCTAGGGGAGGAGAGGGAATCAAGGGAGTGCGTGGTCCCAAGGGGGAACAGGGAATTGGGGGGCCACCAGGTGCAAAGGGAAAACAAGGAATCATAGGAGTCCCGGGTCCCAGGGGGATTCCAGGAGTAATGGGAAGGCCCGGAGAATACCTTTTACCTCCCAAGGTGGTGGTCTCCCCGATGAAGGAAACCATCGTGGAAAAGCACAGTGCCGTGTTTCAGTGTTCTGCTAGCGGAAATCCCAAGCCGACTGTCACGTGGCTAGGAAAGAGCAGCATTCCTTTAAGTAGTCAAGATGGCAGATTGGAAGTGCGTGACGTGACACTTAATGACGCAGGGGAATACACTTGTATTGGAAGAAGCTTACTGGGCAGTGCAAGCCAGAGTGCTATTTTGATAGTAGATGGTTCTTTTCATCCAACTAATGGAGGAAAGGGACGATATGGCACCATTCACAAATTTACCGTTCCTATAAGCGCCCGTTATCTTATCAAAACTTGGGGAGCCCGGGGAGGAAGACACTCTTACAACTATGGATACAATCCGGGAACTTACTATGGCGGTAAGGGTGCGTACATTGAGGGCAAGTTTAGACTGACTAAAGGAACAGTGCTGAATATTGCGGTGGGACACAGAGGAGGAGATTCAGTGGAGGTGAAAGGAGGACGAGAAACCACCCAGACCGCGGCTCAGCTAGGACTGTCTGTAGAGGACAATGCAGGTACAGGGGGAGGTGGTGGCagttttgtttatactacaagtaATATGCTTTTGTTAGCTGCCGGAGGGGGAGGAGGTGCGTCTGGTGGATATAACGGTGTGGATGGTCAGGCGGGAACACGTGGCACCAGTAGTGTGGGGAGAGATTCATCTCATGTTCGGAAGGGAGGCACTGGGGGACAGCCAGGTGAATGTAATAGTGCTGGTGCTAGTTACCATGGAGGAGTAGGTGCGGGTTGGTATACTCAAGGTTGTGACAGAGCGGGTTCTTCACATGGAGAGAGAGGCGGGTCACGAGCTCAAGGTTGGATTGGAGGTCAGGCGGGACGTATGAACAGTGGAAATAACGGGGGGCCTTCCCCTGGTGCGGTTGGAGGATTTGGTGGTGGGGGAGGCGGTTCAGAGGACAATGGTGCATCAGGTGGAGGTGGAGGGTACTCTGGGGGAGGAAGCGGTACTCAAGAAAACCAAGCCGGAGGGGGTGGGGGCTCTTACTGCAGTGGCGATAGTTGTTCTGGTGTGACTGGTGGTAACGTGAATGATCACGGTCTTGTAGAAATTATAGTTATATCCGACTAGCAACAAAACTTATCCCGTTTCAAacctttttgagttttaaaggAAGTTTGGGGAACAAGTGCCAGCTATGCGCTAACTTTAATCAATCCCACAGTTTTGTATCAAACGTGCATTTTCTCGAAACCCACGAGTTGTTGTTGATGGCGATAAGACTCGGACACTAGTCTTGTGGCTCAACGAAGATTTTCCGAACACGGTACTTCTTCCCCGATTGATCGAATGACCTTTATGCTTTCACGCTCAAACGATTTACGACTGCTCAGTTTGGGCGCAGTTGGCAATGGACCTTTTCGACAATTTTGGCGGCaattttgaattctattgtttTAAATAACTTTTATGGGATGCCCCAAAGGCAAATTAGAGTTGCAAAGTATTGGATTTTAACGTGTCTGAAGAGACGATGATAGTATCAGTGGCGTCCACAGATTCTATTTTTTTCTccgaatttgtttttttaggtTTGATACATTCCCGCACAGTTCATTTTCGAAATGTGAAAAAAAGCGTTGAAGCACTGTATGGGCGTTCAACGATTAAGTATACGTCTAACTAAGTTGTTTTGTTCGACTTTTATAAAAACGAAAATAGGCTTAGTtgccgccgctctctcgtgtctggtctttGATGTTCCCGAGCGCTTTGAGGGAGGAGCGCGCGCTCCTTTCTAGAACAGCGGATGGTAATCGAGCCTAAAGCGAAAACTGTATGCGGACTATATACTTGTGGTCACACGCAGTATATATTGAATGAGGGTCTTGATGTTGTCGGGTCTTTTACAGTTAAcggtaattatttttgttttttaacgatagctgttaaataataattattgttttaaaaatgtaaaaattattttgactaCCGTTAGACGTATTTCATATATGTATGAAAATAAGTAaaggttattgaccaagcgtgaggtcaagatggctggatattggccaagttctttttttgcgtgtttatggaccgagacaaagtcgaggtccatgaacacgcaaaaaaagaacgaggccaatatccagccatcttgaccgaacaagctttgtcaataaaggatttattatatgggataaaacaccaaaacatgataaattttccttgcgggacaaagcccgtatcccgagcgggcaagatagctccatcttgcccgctcgggtagccaatcacaacgcgagattcggttcatcttgcccgctcgcggagctaggcatataataaaggTGATTATAATTATTGTAGAATATTATAGCTCACTACTGATGTATAGTAGTATCACAATTAAGCAATCAATGACTGGGTTCAaaggaaacagtgagttttttGTCCTTGAGACCCTCGATATACCTCATAACACAAATATAGAACAAACTGCAGAAAAATTATTTCCTTCAGTCTAGCTGGAACACCAAACTGCACAACAAGGTGTACGACCTGATAACGTGAGACTAGTAAGTTCAAGTTGAAGTTTTTTTTGCTACGGAGGTAAAGACTTCCGGTTCGCCCTCGATAGAGTTGAACCATGACACGTGATACGTTCTCCACCAATcagaaaacttttttgagtagaAGGTATAATAAGCCACTACAGAATTAAGACACAAAATAGTCCAGAAAAAAAGAGATCTCGAGACTTTCACTCTCGTGTCTAAAATTCTTTTGCGGTTAACACCTTTTACGTCTAACggttaaaatgttcaaagtttaCGTGAAATAGCCTGCCCAGCCGCCCTTCCTATAATTCGAGAGACGCTGATTGTTTCTTTCGGGGAGAGAGGCTGTGACACTTAAAGTCGTTAGGCTTTACGCCCAACGACTAAATTTTTGTATCGTTGGCTTACCTCACAACCTACGTTATACCACCGTGCCACGCTATATGTACCACCCTTACGCTAAATTACTGAAGCTATCCAGGTACTTTTGTCTGTGTCTCCTCCTTTGATAAAATCGTTTATAATGACATTGTATCATTTCGGTTTACTAATTGATACTCTTATAACTTAGTTTTGTGTTAAATATTTGTGAAAATTTTAAGCATTGTTGATGAACTATATTTTACATGTGTACACTGGGTACAAATAATCTTTTCAAAGTCCTTGCTAACTGTTTCGTGCGTGATGAAAATACCTATTCGTGCCTTTTCCGTTCGCTTCCATGGCATATCAGTCTTGTTTGGTCCGCGCATCGGGAAAACTATTTTGCTAAGATTCGAACCAGGGCTATATCAGACATTTAGTTTTAATTACCCTTAATGATATTTTATCACCCTCTAATTTTAAGTTAACAATGCTATAACTTAATTTGGAAGgataaataaacatttcttgtgAATGGCTGGTGTTACATCAAGGctgttaacttaggttttaggTTTGAATGACCAAGCATGAGGTTAACATGGCTGGATCATGGCCaggtttattttttcaaacattACAAGCGATCGAACGTTGTTGTTAACAAaatgcctgaaaaaattttatttttcatgttttgtgTAATTAAGTGCCATGGTAATCACTACGCGTGTGATAATCTGACTAGTGACCCTATAAATATATGATACAGTTCTCCGCAAAGACTCAGTGTCAGTGTCATTGTTGATAACTTAAAT

Protein

Uniprot

Uniprot term	Description
Q6PDN3	Myosin light chain kinase, smooth muscle OS=Mus musculus OX=10090 GN=Mylk PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR050938	Family	Collagen and Collagen-like Structural Proteins	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37456	SI:CH211-266K2.1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	-	Glycosaminoglycan binding proteins	ko00536	deepkoala