Gene detail

Detailed information of FUN_013172-T1 in Siderastrea siderea

Genomic Location: contig_10:8389318...8398734
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_013172-T1

TGAACATTtcaatggaaattttttttcccaaattcTGGATACCGAATGTGTAGCACATTGTGTCTTAACAATGTGCCAATATAATTTCcctcatgagaaaaagaatcgaACGGGAGGAGGGAGTATCTGAGATAGGAGATATAGAACaattagaacagtttttaaataacagaaccaaatggagattgaagcaataaaaattttatatctAGCATAGTGTAAAATAAAACGAGTAACCCAGTGAAATGCTTTGAGCGACTCTttctgagatttaataaaaacaaaacaaagcaaatacattttaacaatattttgctttgaGTGAATCAGCAGTTCTAAGTTAAGTCAttgaaatggaagagaaataccaTTCACTGCTACAAGTTAACGCAAAACAagtaaagatgattgaaatattccgtcaactgaaaaagcaaGCAGTGTTTATATTCGCTCTAAGACGGCCGaacgattttttgcgttcaaacaacccaatgtgcagtaccaaagaaaatcaaatttggcttgagaaacaacaCTAACTAGGTCTAGAGTAGTTTCTAttgctatttttttaatgtaaattATTTTACCATCTTATGAAATAAGACACAagcttaataaacaaaacctacaaagacaaaatcttgaaagtttatacgcacaacattttctcgccaagattaactgtaataaatgcaattgcaatatcagatcgcttactttaattttaatacgaaattccatgaaaagacaaacagagaaaaagggaaaacaagccttcaggtgtgaaaaaaaatattcagaataGCACTTACTGTCCTGGAAAGCAAAATGCGTCAAGTACAATTCCGCTTAACTTGATACTGTTTTGTAccaaatttctgcaagttttttaaacatttcaagaaagctattgtaaatgtggattcgctcagttaaaaaattcttacgaagtcaatccacagtcaaatatgtaattttccaaCGGTTGAAGTTGGAGAAATACTTAAAAATCAATCAttgtccttggaaataaaaacgacactgacaatatttacagtctgttctcgaacaaggatttctttgcGCTATTAAACCTCTCCAATTCCTTCTATAACCGCCGTTGagtattcttcaggtctttCCTTGTGgcaacaagcttttaaaagaaatgccTTCAAAAGATTTCATCCTAAGGATGCATGTAAAATTACTGGCATAAAAATCGAGCGTACAAGAAGCCATCTGCTAAAAAGTTTTGTATCAAACGCACTGAGTGTGAAACGATTAAAAAAACtcgaaaatcttgcaaaaaaagcTTCCTTACTTTTACGTTGTTGTCTCTTGATGTGTCCTGGTGGGGTAAAAGCAGGTTTGTTGCTTATGTCACTAGAGGTCTTCTCAATTATGCACATTATAGACGTGATGTGATCGACCAACTCGGccgccattgcattgcatgtgtttttgtggattattttgaattttcccgcgattgagcgaccctgggcacaatctttactacaactaccagaaacctttgcgtgtgtgacgtcataatgaaaatggtctatttaTGTGTGAGCAAGGTACTTTGATATAACTTAATCGAAATTGTGACAAAGGTGATAGGAAACTCGCCACGAGACTGGCCCTTTAAGTGAGAGCTTTATTTAGGGCTGCAAATTGCTtttaaacaacagcaacaaaacctTGCATTTGCTgtaattaaattttgaaatagctgagaaaaaaaaacgcttgTGTTAATTGCAAATTTCCTTGATTCAGTTGATTGCCTGTCAGTGCTGGGCTTCAAAACTGTAATAGCTAGGGAAATCCCTTGACCCCAGTCCCTTTTTAACAGCCCTGCTATGGTAACTTAATCCTGGGTGGGAAATTGTTTATCGAACTTGTAACCTTGCCCAGGCCAGTACAACAGAGCCCTTGCCAGGGTAAATTCTGATGAACATCTTGGGCAAGAAAGTGTCAACAGCTTTTCGAAATGAAATTGGGGCAACTATTAGACTGTTATCAAGGACATACCAGCATTTTAGGATGATAATCTAGAACAGGGGGTGTTGAATCTGCGGGAACACAAGGCATTGAGACAAGCGATGCAGGAATCCTCCCTGGGCAGGGCTTCCAAAAGTTTGTGACATATGAATTTATGATCATGACTTGATCTTATTGCCAACAGCTGAGAATGTAATGAGTCATGGTAGTGACTACATGATAAATACACCTTTGTAGTCATTAAATGTGGCTGTGTGCAATTTGTGTATTTTAATTCTTCTGGCATAGCATTGTTGATGAGCTCTTTGTTCCACAAGGGAGCCCAAAGGACTAAGCTGAGCTACTTTAATTTCCACACAGGGAGCCAGCAGTGTACCGTAACTATAAGCTGCGACAGTGGATGGACTGGCGTACCTGATGTTCGCTTTGATGAGGCAGGGACTTCGGGAGATGGAGGAGGAGGgggtgatgatgatgaggatggtATATCCTTTCTCCAGCTTTTCACTGGCCCAGAAATAGCTGTGGAGAAAGGTGATGAGCAGGCATCAAAATTGTTGCTGTACAACTTTCGCCTTAAAAATTGTGATCATGCCATAGCAGAGTGGAGAGCAGTGTTACAGAATGGCCAACTCTACGTAGAAGTACCAGAAGGGGAAATGCCTCCAGGAAGCAAAGAATGCTTTGTATCACTTCTTGAGTATGCAGAAGAATACCTGGGCTGTGAACATGTATTTGTTGGCCTTCTAAAGGACAGACCAGACAGAGCAAGCCTGATGCGAACCTTCATGTTCATGGGTTTTGAGACGGTGAAGCCAAACCATGAGTTGTGCCCAAACAATTCAGATTTCATCTTTATGGTATACACCATTGAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02100 all species →	ODC_AZ	Ornithine decarboxylase antizyme	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038581 all species →	Homologous_superfamily	Ornithine decarboxylase antizyme superfamily	Interproscan
IPR002993 all species →	Family	Ornithine decarboxylase antizyme	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10279 all species →	ORNITHINE DECARBOXYLASE ANTIZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008073 all species →	Molecular Function	ornithine decarboxylase inhibitor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0045732 all species →	Biological Process	positive regulation of protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16548	OAZ1; ornithine decarboxylase antizyme 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.