Detailed information of FUN_013179-T1 in Siderastrea siderea

Genomic Location: contig_10:8450564...8467767
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01564
all species →		Spermine_synthSpermine/spermidine synthase domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029063
all species →		Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR051419
all species →		FamilyLysine/N-terminal Methyltransferase SuperfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12176
all species →		SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_013179-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25166EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferaseEC:2.1.1.-
Translation factorsko03012deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_013179-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
20TPM > 0
7Conditions
95.8Max TPM
6.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 0.98 19.67
holobiont · control.pH_high.temp 20 5 10.91 62.53
holobiont · control.pH Control.temp 19 8 15.53 95.78
Whole organism 4 4 10.10 13.50
unannotated 1 1 6.50 6.50
live coral tissue/skeleton 1 1 9.11 9.11

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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