Gene detail

Detailed information of FUN_013294-T1 in Colpophyllia natans

Genomic Location: contig_20:989312...1023134
NR annotation: XP_020622597.1, DNA polymerase alpha subunit B-like isoform X1 [Orbicella faveolata]
Species abbreviation CNATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O89043	DNA polymerase alpha subunit B OS=Rattus norvegicus OX=10116 GN=Pola2 PE=1 SV=2
P33611	DNA polymerase alpha subunit B OS=Mus musculus OX=10090 GN=Pola2 PE=1 SV=2
Q14181	DNA polymerase alpha subunit B OS=Homo sapiens OX=9606 GN=POLA2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005301 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04042 all species →	DNA_pol_E_B	DNA polymerase alpha/epsilon subunit B	Family	Interproscan
PF08418 all species →	Pol_alpha_B_N	DNA polymerase alpha subunit B N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016722 all species →	Family	DNA polymerase alpha, subunit B	Interproscan
IPR007185 all species →	Domain	DNA polymerase alpha/delta/epsilon, subunit B	Interproscan
IPR043034 all species →	Homologous_superfamily	DNA polymerase alpha, subunit B, N-terminal domain superfamily	Interproscan
IPR013627 all species →	Domain	DNA polymerase alpha, subunit B, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23061 all species →	DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005658 all species →	Cellular Component	alpha DNA polymerase:primase complex	Interproscan
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02321	POLA2; DNA polymerase alpha subunit B	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.