Gene detail

Detailed information of FUN_013340-T1 in Acropora pulchra

Genomic Location: ptg000008l:21333902...21345353
NR annotation: XP_044178053.1, ephrin type-B receptor 1-B-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_013340-T1

ATGTATAATATTTGCTTTAACTGTGTTAAAGTACTTTCTTTCTTTGTGTTTGCTTTTTCTCTCATTTCTTATCTCTCTTCACAGTGGTATCAACCAACTAAACAGAACGACAGATATGCTATTTGCAATCCGGATAACTCCCAAGAACCAAATAACTGGTTACGGAGTCCTATCATTAAAGTTGGAGATATTCAAAGATTAGATGTCACCTTTAGATACTTTTTGCGGCCTTGCGGTCAATCTGCTTCTTTTTGTCAGGAATCTTTTTACGCGTATGTCTGGGAATCGAATACAAGTGTCATTCCGCGACAAATTCCTCATCCTATCAGCGACTTTCAGTTATATCGACGTTTCGCAAATATCACTGGTCAGTCTGAACAAGATACAATTTTGACAGTACCCCTTCATGTGACCAGCAAATATATTGTGCTGGGAATTCGCGATCAAGGAGGATGCAGAACATTGTATTCCGTGAAAGTCTCTTATAAGGTTTGCGTTAAAAAGACACTTAAGGACCGCCTGGTATCTTTTCCTTCAATGTTAGCCCAAGTAGAGTCAACGCCTGTGCAAGGAATTTGCATGACGAACTCTAGGCAAATTGTGCCTGGCAATTTGACTGTTTTATGTGATAGCGATGGAGTGTGGAATACCAGTCGACTTGAAAGCAGGTGTGTTTGCAAGAAAGACATGGAGAACAGACAAGGGAAATGCACAGCGTGTCCTGGTGGAACATACAACGAAGGGAGAGGACTTAATTGCACCGAAACACCATCAAAGCCACGAAGTGCGTCCGTATATTTCGTTAATGAAAACTCAACTATCTTAACTTGGTTGGTTCCTGAGATCACTGGAACTCCAAACAACGTGTGGTATGATGTGAATTGTCGCCCTTCCTGCGAATATGTTAGCGGCTGTGAAAAAGAAACCTGCAACAGCGACATCAACGTTCAATTGACAGGGGAAGGGCTCCAAGGAACTAACTTCACCGCAGCAAATCTGACTTCCTTTGTAAACTATACTTGTAAAATAACTGCCAAGAACAGAGTCAGCAAGATTGCTGCTGCAAAAACACAGGCCTCTGAAAGCGAACGAAGCGTTACTTATGTAACTCTGAGGACCAAAGGATCTGTTCCTGGTGCACCGGAATATGATACTGTCGCCTATGAACCCGAAACTAATTCTATCACCCTTTCATGGATTGTGAAATGTAAAAATGGCATTATTCAAGAGTACAGGATAGAATACGTCAGCGTGGACGATTCCTCTGGGAGTAAAAACCTGAGAACTAGAGACACCAAAATACAGATAGGCAGTCTCCCGGCGGGGAAAACCTTAAGATTTCAGGTGTATGCTGTGAATAACTTTGGGATAGGATCACCCGGCGTCACAACGTTTCATATTCCGAAAGGAAACCTTGGAAACCCTGGAAAGCTTCCGTCACGGTTAATATTTATCGCTGCAGCCTCAGGGGGTGGAGCCTTCCTGCTTATCATCGTTGCTGTTATTTGTTTCGCATGCGTTGTTCGTGGCAGAAGGCGCAGGGCTCAAAGTATGCAAAAAGACTACATGCGATGTCTGGAGCGAGGATCAGACAGTAATTTTCCAATGGATCAACGTCGGTACATCAATCCCGGAGATTACCGTGACCTTATGGAGCTACTGCAAACATTCACTACTGAAGTCGATAGAAGCAAAACCAAGTTGAACGGGTTGATTGGGCAAGGCGAGTTCGCAGATGTTTACAAAGGATCAATTCAGACTCCGAAGGGAAAGCTAGTTGTGGCGGTCAAGGTTTTGAAGCCTGGCTCCAATGAAAAAAACCAAAAGGACTTTTTGTCAGAAGCATCCATCATGGGTCAGTTTAATCATCCAAATGTCATTCGACTTGTAGGAGTGGTTACTCAAAGTTGTCCCATGATGATCCTCACAGAATTCTTGGAGAGTGGATCATTGGATCATTTTTTGAAGACTCGCAAAGGCCAGCTGACAACTATTGAGTTGCTAGGAATGGCAAGAGGCGTGGCTTGTGGAATGGTTTATCTTTCGGAGATGAATTTTATACACCGTGATCTGGCTGCTCGTAACATTCTTGTTGGCGAGAACTTGTCTTGCAAAGTATCAGACTTCGGTCTTTCAAGAGAGCTGGCCGATGATAACCCGGATTCAGAGTACGAAACTCAGGGAGGAAAAATTGCAGTTCGTTGGACAGCCCCTGAAGCACTTCAGAGCAGGAAGTTCAGCTCAGCTAGTGATGTGTGGAGTTATGGTGTTCTTGTTTGGGAGATCATGTCATTCAGTGATAGACCTTACTGGGAATGGAACAACTACGACGTATGTATTTAA

Transcript

FUN_013340-T1

TTGGCTGAGTTTTTCCTTGGTTAACTCAATTTCATCTCGACTACAAACTGGTTCGTTGACCTTGACTTTAGGTTATTTAAAGTGTTTCTTTCTTTGCAACTGTGTAACGCATTAGAGCACAAATAGAAAATGCGATGTGTAGAAAATGCCCATTTTCAAGATTCTCTAAACATTGTGAGTATTCAGACCCCGTCATCGCAGCGTGAAGCTTTTAGAAAACCGTGTATATGTATAATATTTGCTTTAACTGTGTTAAAGTACTTTCTTTCTTTGTGTTTGCTTTTTCTCTCATTTCTTATCTCTCTTCACAGTGGTATCAACCAACTAAACAGAACGACAGATATGCTATTTGCAATCCGGATAACTCCCAAGAACCAAATAACTGGTTACGGAGTCCTATCATTAAAGTTGGAGATATTCAAAGATTAGATGTCACCTTTAGATACTTTTTGCGGCCTTGCGGTCAATCTGCTTCTTTTTGTCAGGAATCTTTTTACGCGTATGTCTGGGAATCGAATACAAGTGTCATTCCGCGACAAATTCCTCATCCTATCAGCGACTTTCAGTTATATCGACGTTTCGCAAATATCACTGGTCAGTCTGAACAAGATACAATTTTGACAGTACCCCTTCATGTGACCAGCAAATATATTGTGCTGGGAATTCGCGATCAAGGAGGATGCAGAACATTGTATTCCGTGAAAGTCTCTTATAAGGTTTGCGTTAAAAAGACACTTAAGGACCGCCTGGTATCTTTTCCTTCAATGTTAGCCCAAGTAGAGTCAACGCCTGTGCAAGGAATTTGCATGACGAACTCTAGGCAAATTGTGCCTGGCAATTTGACTGTTTTATGTGATAGCGATGGAGTGTGGAATACCAGTCGACTTGAAAGCAGGTGTGTTTGCAAGAAAGACATGGAGAACAGACAAGGGAAATGCACAGCGTGTCCTGGTGGAACATACAACGAAGGGAGAGGACTTAATTGCACCGAAACACCATCAAAGCCACGAAGTGCGTCCGTATATTTCGTTAATGAAAACTCAACTATCTTAACTTGGTTGGTTCCTGAGATCACTGGAACTCCAAACAACGTGTGGTATGATGTGAATTGTCGCCCTTCCTGCGAATATGTTAGCGGCTGTGAAAAAGAAACCTGCAACAGCGACATCAACGTTCAATTGACAGGGGAAGGGCTCCAAGGAACTAACTTCACCGCAGCAAATCTGACTTCCTTTGTAAACTATACTTGTAAAATAACTGCCAAGAACAGAGTCAGCAAGATTGCTGCTGCAAAAACACAGGCCTCTGAAAGCGAACGAAGCGTTACTTATGTAACTCTGAGGACCAAAGGATCTGTTCCTGGTGCACCGGAATATGATACTGTCGCCTATGAACCCGAAACTAATTCTATCACCCTTTCATGGATTGTGAAATGTAAAAATGGCATTATTCAAGAGTACAGGATAGAATACGTCAGCGTGGACGATTCCTCTGGGAGTAAAAACCTGAGAACTAGAGACACCAAAATACAGATAGGCAGTCTCCCGGCGGGGAAAACCTTAAGATTTCAGGTGTATGCTGTGAATAACTTTGGGATAGGATCACCCGGCGTCACAACGTTTCATATTCCGAAAGGAAACCTTGGAAACCCTGGAAAGCTTCCGTCACGGTTAATATTTATCGCTGCAGCCTCAGGGGGTGGAGCCTTCCTGCTTATCATCGTTGCTGTTATTTGTTTCGCATGCGTTGTTCGTGGCAGAAGGCGCAGGGCTCAAAGTATGCAAAAAGACTACATGCGATGTCTGGAGCGAGGATCAGACAGTAATTTTCCAATGGATCAACGTCGGTACATCAATCCCGGAGATTACCGTGACCTTATGGAGCTACTGCAAACATTCACTACTGAAGTCGATAGAAGCAAAACCAAGTTGAACGGGTTGATTGGGCAAGGCGAGTTCGCAGATGTTTACAAAGGATCAATTCAGACTCCGAAGGGAAAGCTAGTTGTGGCGGTCAAGGTTTTGAAGCCTGGCTCCAATGAAAAAAACCAAAAGGACTTTTTGTCAGAAGCATCCATCATGGGTCAGTTTAATCATCCAAATGTCATTCGACTTGTAGGAGTGGTTACTCAAAGTTGTCCCATGATGATCCTCACAGAATTCTTGGAGAGTGGATCATTGGATCATTTTTTGAAGACTCGCAAAGGCCAGCTGACAACTATTGAGTTGCTAGGAATGGCAAGAGGCGTGGCTTGTGGAATGGTTTATCTTTCGGAGATGAATTTTATACACCGTGATCTGGCTGCTCGTAACATTCTTGTTGGCGAGAACTTGTCTTGCAAAGTATCAGACTTCGGTCTTTCAAGAGAGCTGGCCGATGATAACCCGGATTCAGAGTACGAAACTCAGGGAGGAAAAATTGCAGTTCGTTGGACAGCCCCTGAAGCACTTCAGAGCAGGAAGTTCAGCTCAGCTAGTGATGTGTGGAGTTATGGTGTTCTTGTTTGGGAGATCATGTCATTCAGTGATAGACCTTACTGGGAATGGAACAACTACGACGTATGTATTTAAGTGGATTTTGATTACCTTCCGGCAAAAAAGCCATGTGAGCAAAACGTTTTGGTGTGTTGAGTGTCTAGAAAGTTGGATCTTGATCAAATGAAATCGAAACCGCGACTGCGAGTCGCAGTTCATCGATTAGGTGATTATCTTTTAGAATGATGATCTTGGTGATAATTTGAAGCGCGAAATTTTAGGGTGGGGATGAGTTCAGAATTAGCTTGACGTATGCCACTTTACGTCATGTTACATTTATTACGTTCAGGTTTGCAATTGCAACATATCACCAATATAAGCTATTTGTCTTTTAATTTTCTAAGGTTATGAATCGAGTGGAAAGTGGATACCGACTTCCATTACCAACGGTAAGTCTTTTCTAACCATGCGCGGAAGTGACAGAATAGTCTAAAGGAATTTGCAATCGATGTACTAGGTTTTGTTTGTTTTTTTTCCTCAATTAAGCTGAAAATCTGCAGTGCCGTCAACTCACCATTTTGATGTTGTATAATCTTTCAAAGTTCATCTTAATTTCAAAATTCCATCAGCATTTTTTATCACTGACTTGGTAAATGAAAGACGCGGGGAGTGTTCAGCGAACGGGCGATCTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07496	Ephrin type-A receptor 4 OS=Gallus gallus OX=9031 GN=EPHA4 PE=1 SV=2
O08680	Ephrin type-A receptor 3 OS=Rattus norvegicus OX=10116 GN=Epha3 PE=2 SV=1
P29320	Ephrin type-A receptor 3 OS=Homo sapiens OX=9606 GN=EPHA3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000240 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01404 all species →	Ephrin_lbd	Ephrin receptor ligand binding domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001090 all species →	Domain	Ephrin receptor ligand binding domain	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_013340-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.