Gene detail

Detailed information of FUN_013399-T1 in Acropora pulchra

Genomic Location: ptg000008l:22078065...22085983
NR annotation: XP_029194036.2, mediator of RNA polymerase II transcription subunit 18-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T3H7	Mediator of RNA polymerase II transcription subunit 18 OS=Danio rerio OX=7955 GN=med18 PE=2 SV=1
Q9BUE0	Mediator of RNA polymerase II transcription subunit 18 OS=Homo sapiens OX=9606 GN=MED18 PE=1 SV=1
Q9CZ82	Mediator of RNA polymerase II transcription subunit 18 OS=Mus musculus OX=10090 GN=Med18 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006492 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09637 all species →	Med18	Med18 protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019095 all species →	Family	Mediator complex, subunit Med18	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13321 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION, SUBUNIT 18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006369 all species →	Biological Process	termination of RNA polymerase II transcription	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15135	MED18; mediator of RNA polymerase II transcription subunit 18	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.