Gene detail

Detailed information of FUN_013400-T1 in Acropora pulchra

Genomic Location: ptg000008l:22085496...22098107
NR annotation: XP_029194035.1, Y-box-binding protein 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_013400-T1

TACATCGATCTTTGCTAGTCATTTAATCTTTTCTGTGCTATATATAGCACAAAACAAAATGTCTTAATACTCACCAAGGTGCTTTTGGATCATCCAAAGAATGTCTTACTCTAAAGGAGATATTACTGCTTGAATTCCCTTCAAAAACAAATAAACATCAGAAAAAGACAACTGTAACAATAATTTTAAACAAAGACCTTAAAAAATGTCTATTTGCAGGTGCAAGAATAAATTGTAGTTCTTTACTGTGAGTAAAAAAAACATGGTCTAGTCAGCGAAAAAAAAAACTGCATTTCTTGACAAGCGAGACAAAAAAGACTACTGCTTTTACCGAGAGTAAAAACCATTTCATGATCCCCAAATGTTGTAACTTGTCTTGATACGCCATCACAGAGTCCTCTAAGTCTATGCAATAAGGTGTGCACTGAATCTTTTCCAATGCTTCCCTGTAAAAAGTATTCCAGCTGATTTTGTCTTACGACCGCCATTTTCTTTTCTAGACTTCGTCTCAACGAGGATTTACCGACTAAATCGCGAAGAGCATAGCGCACGAAAGAAAAATTATTTAACTCGCCTATTTTATTATTTTATATCATTAAATGGTTTGCGTGACCGTCGAATTATGCGTTACAGATAGTTTTTGCCCCGAAACTGGCGAAATTTTCAGAACACTTTGACATTTCACTTTCTCCGTAAAATTGTCGTCTATTCGGAAAGTAGCGTGGGACTGGAAAATACAACTCCCAGATAACCTTGCGTGACCACAAACGAGTGTGAATTGAGATCACAGAGGACGCCATCCATCGAGGAACTGACGGACAAACAGAGCCTTTCCACCAAGTACCGAGGGCCCTAGAGGCTGTAACCATCAGCAACATGACCACGACCGAAGGACAACAAGTCGAGGAAAAAGACCCCGTTAGTAAGAAAGTTGTTGCCAGTAAAGTAACCGGTACGGTGAAGTGGTTTAACGTGAAGAATGGCTACGGCTTTATCAACAGAGATGACAACAAGGAAGATATATTTGTTCATCAGACTGCCATCAAGAGAAACAATCCCAAGAAATTCTTGCGTAGTGTCGGAGACGGAGAGACGGTAGAGTTTGATGTTGTATCAGGAGAAAAGGGACTCGAAGCATCAAATGTGACTGGACCAGATGGAACTCCTGTACAGGGCAGCAAATATGCACCTGACCGTAGAAGGTTTTACTATCGCTACTACCGAGATTCTCGAGCTCCAAGACGCCGGCCCAGAGGAAGACCTTCAGTCAATGGCGAGGAAAAACCTGTTGATGAAGAAATCAAACGAGAGCCAGATTCAGGTGATCAGAAGGAACGAAACGAGGAGGACGACAGGCCTCGTCGTCGCCGACAGTATGGAAGACCACCTCCTCCATGGGCCAGGCGCCGCCGTCGCCCCCCACCCCAACGGGAGGAGTCAGGAGATCAGTCTGAGGAAGGCAAGGGTGATGAACAGAGGGAAGAGCCTGGTGAAGGAGAGGAAAGGAAGCCTCCGCGTCGTAGGCGCAGACCAAGATACAGGCCCAGGCCCGAGCAAGACGAACGTGAAGGCGAGGAGCGGGAGGAACGAGGCGAGCGGGATCACGGAGAGGAAGGTGGAGACGAGAATCCACCGGACAGTCGTCGTCGACGTCGTCGTCCATTTTTTTACCGCAGGTATCCTCGGCGCCCTCGCAGAGAGGACGGTGAACAAGGGAAGGAAGGCTCTGATTCCAAGGCGGAGCGTGAAGAAGGAAACAGAGGCGATGGCACCGCAGATTAATAAACATTTAACCATCAGGCAACTATGAGCCTCATTTTCAATTTAATAACCTTTTTTGCTTGTTAGAATCGGGAGAAAACGGAGTACTATCAATTTTTGTTATCATCATTGCAAATCAGTTACTGAAATTTCTAATTGGTACATGCCTTTATTCCAGTTTTGTTTCCCTTTTGTCACTTCTCATCTGGTTTTAAAGATATGTTTTACTAAGAGGTCTTTCGGTTTTCTGGTTCTGTTTGATTGTGTAGAGTGCAATTTTCTTTGAGGTCATAGTTGTAATTATGACATCTTGACTATCTTAATCCATCTTGGAGCGGAATTCAGCATGTATGAACGATCAATTTCTAGCCGTCTTATTGCCTTGGATTAAAAAAACCGTCGTGAAAAGAGGAAAAACTTCGTTTCGTCTTGAGTCTTCACTTTTTTTAGCACCTGAAGGTGATTTATAAATCGAGCATCGCGTTTACGGCAAGCGTCACGCATTGTGAAAATTTTCAGTCTGTTGCTCATTTATTGCTAGTTACCAACAGATGTGAAGCAGCTTCTCAGGAGAGAAGAATAACTGTAATTTCTTGATTTTATGACAAGCAATGGCCCGTCTTTTACGTTTGCCGTCTAAGGCGAAGCTATTCTCTCCATTCTCGCTTTGGAGCGCACAGAGAAAAATTGGACTTTGTGGGCGATGTAAAGGTGCTTTTCTCAGGTCTGTTTTCTCAAGGTCTTTTCAGGGAATTTACGCTGGGAGCCTTTCTAGGTAGTTGTACGTTCAAGTAGCTTGTCTGTTGATCACCCGCCCACCGTCATTAACGCTTTGTTCCATGCATGAAGTAAGCGTCATATCTTGACTTCGTTAGTATTGGTAATCGCATGGGGCGAGTAAAACACGCCTGTTTTCAGAAGTTGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P16989	Y-box-binding protein 3 OS=Homo sapiens OX=9606 GN=YBX3 PE=1 SV=4
P21574	Y-box-binding protein 2-A OS=Xenopus laevis OX=8355 GN=ybx2-a PE=1 SV=3
P45441	Y-box-binding protein 2-B OS=Xenopus laevis OX=8355 GN=ybx2-b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002110 (this species only)
Transcription factor family	CSD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313 all species →	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059 all species →	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR019844 all species →	Domain	Cold-shock (CSD) domain	Interproscan
IPR011129 all species →	Domain	Cold shock domain	Interproscan
IPR050181 all species →	Family	Cold shock domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544 all species →	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09276	YBX1, NSEP1; Y-box-binding protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.