Gene detail

Detailed information of FUN_013439-T1 in Dendrogyra cylindrus

Genomic Location: contig_20:1884138...1893044
NR annotation: KAJ7390473.1, hypothetical protein OS493_025176 [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_013439-T1

GATCTTTCTCCGATCTTTAAAGATTCAGACATTCGTCACGAAAATGTTTTTCCGGTTTGGGTCGCTTTATTTGTTTCCCGAACGTTTGCGAGAGCATTAATTGCTTCCTCTGTACTAATGGGACAGCAGTATAGTTTTGTGGTGAAGGTTTTATACGATCATGCTCTCGTTCTCAAAGATTTAGCAGTTCTCAACCACGAGGGACTTGCAAgtGCAGTGGAATATCTCAACAAAACACTCAGAACCTTTGCAGAGGGCAGAGGCCATCATATTGTATTTGCAATAAAGGAACCCTCGGATGAAAATTGCCAATATTTGTGGAAGGCCACAACAAGAATATTTTGTTACAAGGTCAATTCCTACAGCGGAAATGTCGAGAGTGAAAGGGTCATGGACCTCAGACAGTTTTGCAAATTATATCGTGATATCACCAAGCAACTGAGGTACACGCACAGCATAACAGATGAGGACTGGGAGAAAGTGGATTGTGATGGCGAGACATGTGTCTCGTGTCCAGTGAAGCTAGAAGAAGTTAGGGAATCTCTTTGTGCATCAATGATATTTACAAGGGTTGACGAGGTAGCTGCAGAAGATTTTTCAAAGGATGAGTGTTGTATATGCATGGATCAGAAGGCAGAAGTCATCTTGGCTTGTGTCCATAGCTTCTGTAAACATTGCATCGATAGATGGAGTGATGTTAATAACACTTGTCCAATTTgccgagatgagattcatggaAATAAAGACTACTGGGAAATGCCAGAACCTCCAAGCAAAGGAGAGATTGGACAGTTTGTACTGGGACTAGCTGAAGGAGCTGGGGCCCCTACGTGATACAAGCTGGCTTTAGTTAGTTGATGAAAAGAAAATACTGTAATATATAACAGAGTATAGTCGAACCATACAGTAGGGATGTCAGATGTCTGCAAAGGGTAGAGGAGATGAAGGTGTGGGGAAACTCCCATGATATAAAACTGTTGGGGGTGTTCAtcagaaattttaaattttggtAGCAGAATCCATTTCTAGGAGCGTGCCTTATGTTAATAATTAGCTCATTAAGAGGCACTGCATGAAGTCTCTTTTATGAATTAATGATAGTGAGGTCGACCTACAGTAGCTGGGCAAGAGCAACATTATTTCTTGACAACTAGTTCCATTTTTGAATTGAAATAAAACATGCACCTGCAGGATCGACTCCTGGATTTATTTTTGAGAGGTATATAGCTTGCCATTATACCTACAGTTTCTTACACCTCAAGTAAACGCTCGAGATACACTGACACGTTTTCAAATTCTAAACGATACGGTGAACATCCCCATCAGTGACATAGAGTCTCTACCCAGGGTTCAGAAAAGGGCCATTGGGTCGTCCGGGACAAGTATAATGACTTAACGCAAGGTGATCCTGGCATTTTCACAGCAACTGATCAATTGATGTTTGACCAGCAAGAACTGGAAATATCTAGTCAAGAGTAAATACAAAAAGCTGCAATGTAGGTACAAGAGTTATGTACTGTATATTACAAGTTGGGAAGCATTGCGTAATCACGGAGAGGTGTTCTCCCTCATGCCTACCCTCCCTGAACTCCTGTCCTCTATTACTCCCATTCCTGCTATGTAGATGACCTTAAGttagtgaaaaataaaaatataataacacTTTGTTTACAAAATTTCAGGGTTTAAATCACCCTGAAACTATTCTACTTGTCTGGTACGTTTTCGAGTACAGTACTTTGTTAGATTCCATTTATAAAACTGGATTACTACAATCGTAACTGAAACAAAAGAGAATAATGTTTCCAATACTGATGATGCAAACAAATGATGAAGTTTGAAATCAGTGGCTTCTGACAAGTGTAATAGGTAGATATATTTTGTTGAAATATGCTTAATCGTATTTGAGCAATCAATACGCAGAGTATCTTGGTCATGTTATAAAAGGTGATgtaaaatgttttgtgtccTTTGAAGGCCTTTTTTAATCTGACATGCTTTGCACATCAAGGTGCATTTTTCATATACGAAAATCACTCAGGAATTGAGCACATGAACAAAAGCACAGATCTGCGCAAATTATTGGATCTGTCAAAGTACATGGCAAACCATGGATTTTTTAACCAAAAAAATGCAAAGCATGTAAGATGAAAGTGGgcctttaaaattattttgaccaAAAAGTGCTTAACTTTTAAGTTAATGCTAGCGTGTTATATTTATTGCTTAAAGCCACAATAATTTAAATCTTACTGCATTCCATGAAAGTTAGTAGTATGGCCTTATCACTAAAAACTGTTGTTTAAAGTAAAAGATTTCCATAGTAagttatttacaaaatattttaaaagaatcagcaaaaaaaatgtctatgtggagctccgcttttaggcttggctaaatctatatattatattgGTGTGGGGACTTCTAATTTTGTAtaaaaatgtgatatttgtaaaaaaaaatcataaaactTTAGAAAAGGCAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32L15	RING finger protein 141 OS=Bos taurus OX=9913 GN=RNF141 PE=2 SV=1
Q6IV56	RING finger protein 141 OS=Danio rerio OX=7955 GN=rnf141 PE=2 SV=2
Q8WVD5	RING finger protein 141 OS=Homo sapiens OX=9606 GN=RNF141 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007514 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043400 all species →	Domain	RNF141, RING finger, HC subclass	Interproscan
IPR047126 all species →	Family	RING finger protein 141-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12109 all species →	RING FINGER PROTEIN 141-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0051865 all species →	Biological Process	protein autoubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22817	NSMCE1, NSE1; non-structural maintenance of chromosomes element 1	EC:2.3.2.27	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.