Gene detail

Detailed information of FUN_013448-T1 in Dendrogyra cylindrus

Genomic Location: contig_20:1989081...2009078
NR annotation: KAJ7390466.1, Activating molecule in BN1-regulated autophagy protein [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_013448-T1

ATGCGTAGGGGAAAACAATCCAACGTTCTCTGTGCCTTGATCAGACGAGAGACGAGCTGTCGAAGAACAAACGATCACAATTTGTTGCTTTCCTTCGCGGAAGATTCCTCTGTGATGTCTTGTAACCGATCGAAGGAATGTGAGCTGCCAGGATCGCCAAGGTCAACGTTCCTTGTCAGTTTCAGCCCTGATAAGACCAAAATGGCGTCATCCCATGGAGACCACACAGTGCGTATAGTTGACTGTAAGACCTTGAAATGTATCAATACCTTAAGAGGCCATCCTCGCACACCATGGTGCATTACCTTCCATCCTTCATCCAATCAGCTGCTGGCATCAGGCTGCCTTGGAGGTCAAGTTAGAGTTTGGAATTTAAAGacaGGCGATAGTGAAGTGTATACTCCTCCAGATAAAGCTGTCATAGCGTCGCTGGCCTTCCATCCCACGGATCATGTTCTGTTGATCGCCACCAGTAACAAGCTGTTGTTTTGGAGCTGGGATCAGCCAGAGCCATTTGCTTGTATTCAGACTGCTTCAGTGGAAGAGAAAGTCAGGTTGGTTGCATTTTCTCCTCTGGGCGATCATATTCTTACTGCAGTCACAAATATTGCATCACAAACGCCACAGGCTGCTAATCCAGGAACATTCGCTCCAAGtcgttCATCGGTCGTGAATCGTCTTCTGCAATCAATTGGAAACTCTCGAACGGACGCCGGTGATCAGTTTGCTGCCTACATGTTACGACCTTCTACGGCGTCAAGTGGTTTTACATCTTTATCGTCTACGTCTACAACTTCTGCTCCCGTTCCGGAAACAACCAGTACGGCATCCTTAAATTCGCCTGGATCCACTGTGGACTCCAATTCGGAGCTAAGGGGAAGTGAAGCGAGTTCAAGATCGATAAGGAATCAAGGTGCTGCCAATCAAGCTGACGTCACTGATAACGGTAACCAAGACTACAGAGGCGTGTTCGCCATATTTAGAGCCCGCGATAATAACACGTGGAATTTTGATGTCACCAGCGATGGTTCACCAAGTAACGTTCTGGAGCATGGATCTAACGCTAGTTCCGTTACTTTTGAGTCGGATTCGAGTAATGAAGACTCTGGGGTCAGTTTGAGTCTAAGTGCAGGCGACACAGATGTGTATCCTGATGTTGGTGATGCAACTGCAAACCCGGACAGTATGGAACAATCCGTGCCCTTTAGCTCGCAATATTTTTCATCAGACGCGGTCCCGCCCTCAGAGGAGGCTAGCGACCGTGTAGTGGGGGTGGGACGAGTCATCAATGTCGGCCTCAGCTCTTCACGGACTAGTTATCTCTCTCATGGCTCCAACCACAGTTCGAGCTTTGCGACCCTAGGCGGCAGCCAGGGATCTGGGACTGCCGTCGCTACGGCAACGGCGCGCACATTTCGGCATGTGCACACAGCGGTGGTGGTCGCTGATGGAACTAATGGAGGGCCCCAGTTTGCTCTGAGGTCCGCAATAAATAGGGCCATCGCCGGCGCATTTGCGGGTTGCGGCGAAGGAGCCGTGGCAAGTAATATCATCAACACTACACATCGCTTGCAGTGGTGGGACTTTTCTCAAGTGAAATTACCAGATTTAAAGGACAGTGAGGCTCACGTGATCGCGCCAAGCTGTAAAATCCATAACGACGCCAGCTGCGACATTTCAAGCGATGGAAAGCTGCTGGCCACGTTTGTACCCAGTGCCCAGGGATTCCCGGACGATGGCGTTGTGGCGGTGTATTCTCTTGAGAAAACCACTCTAGGGCAGTGCGTGTTCTCCAAGAAATTTGGTCCAAATGCGATCTCCATCAGCCTGTCTCCATGTGATCGATATATCATGGTTGGCTTAGCGGCCAGGCGACTTCACTGGCATCTCACATCACGGCAGATGGTGGCACAGATCTTTCGGCTGACAGATAAAGACAGCTCGTCTGATACAGTGAAGCCGGCAGTTACTATCATGCACGAGTGTGAGCCTGATCGAAGAAGTCACGTGAGTGTCAATGCAGCGTTCTTCCATCCCCTGGTGGGGAATGGATTGGTTTACGGCACCAACCGAGGTCATCTGCACATGCGCCAGTTTGGACCAAGGTCCGTTTCCAGATATTCAAATCTTACTACCTGA

Transcript

FUN_013448-T1

AAAGGATACTGGCACGCGATATCGCGTTAGtattctttttttgacggcaaGCAGTCTAGTATAAGTGGTCGCGGGAAACCTCATTTGTTTTACAAACGAATTCAGCCGAAAACATGATTTTGATCTCGAATTACCAAGGATCTGAAAAGGCGCGGAGTATGTAGCGATGCTTGGGAAACCTTTACCGCCCGGAGAATTATTCACATTGGACATTACGCGCATACCACCGGCATATTTCGCCAAGTCCATTCAAGCACTTGGTTTTATTACGTGGGAGGTTAGCTGTTGCGTTGTGTTTGTTTTCGAGAAAGATTTTCAGTCGGCATCTTTCACTCGCATTTGAGAACAAGTTTCATTCACCTTCTTCAAGGACGATTGAAGGTAGAAACGAGAAAGCGCAAGTGAATTTATTTTTCGCGAGACACAGACGACTGCGCAGGAAGTTGGCCGACAATGCGTAGGGGAAAACAATCCAACGTTCTCTGTGCCTTGATCAGACGAGAGACGAGCTGTCGAAGAACAAACGATCACAATTTGTTGCTTTCCTTCGCGGAAGATTCCTCTGTGATGTCTTGTAACCGATCGAAGGAATGTGAGCTGCCAGGATCGCCAAGGTCAACGTTCCTTGTCAGTTTCAGCCCTGATAAGACCAAAATGGCGTCATCCCATGGAGACCACACAGTGCGTATAGTTGACTGTAAGACCTTGAAATGTATCAATACCTTAAGAGGCCATCCTCGCACACCATGGTGCATTACCTTCCATCCTTCATCCAATCAGCTGCTGGCATCAGGCTGCCTTGGAGGTCAAGTTAGAGTTTGGAATTTAAAGacaGGCGATAGTGAAGTGTATACTCCTCCAGATAAAGCTGTCATAGCGTCGCTGGCCTTCCATCCCACGGATCATGTTCTGTTGATCGCCACCAGTAACAAGCTGTTGTTTTGGAGCTGGGATCAGCCAGAGCCATTTGCTTGTATTCAGACTGCTTCAGTGGAAGAGAAAGTCAGGTTGGTTGCATTTTCTCCTCTGGGCGATCATATTCTTACTGCAGTCACAAATATTGCATCACAAACGCCACAGGCTGCTAATCCAGGAACATTCGCTCCAAGtcgttCATCGGTCGTGAATCGTCTTCTGCAATCAATTGGAAACTCTCGAACGGACGCCGGTGATCAGTTTGCTGCCTACATGTTACGACCTTCTACGGCGTCAAGTGGTTTTACATCTTTATCGTCTACGTCTACAACTTCTGCTCCCGTTCCGGAAACAACCAGTACGGCATCCTTAAATTCGCCTGGATCCACTGTGGACTCCAATTCGGAGCTAAGGGGAAGTGAAGCGAGTTCAAGATCGATAAGGAATCAAGGTGCTGCCAATCAAGCTGACGTCACTGATAACGGTAACCAAGACTACAGAGGCGTGTTCGCCATATTTAGAGCCCGCGATAATAACACGTGGAATTTTGATGTCACCAGCGATGGTTCACCAAGTAACGTTCTGGAGCATGGATCTAACGCTAGTTCCGTTACTTTTGAGTCGGATTCGAGTAATGAAGACTCTGGGGTCAGTTTGAGTCTAAGTGCAGGCGACACAGATGTGTATCCTGATGTTGGTGATGCAACTGCAAACCCGGACAGTATGGAACAATCCGTGCCCTTTAGCTCGCAATATTTTTCATCAGACGCGGTCCCGCCCTCAGAGGAGGCTAGCGACCGTGTAGTGGGGGTGGGACGAGTCATCAATGTCGGCCTCAGCTCTTCACGGACTAGTTATCTCTCTCATGGCTCCAACCACAGTTCGAGCTTTGCGACCCTAGGCGGCAGCCAGGGATCTGGGACTGCCGTCGCTACGGCAACGGCGCGCACATTTCGGCATGTGCACACAGCGGTGGTGGTCGCTGATGGAACTAATGGAGGGCCCCAGTTTGCTCTGAGGTCCGCAATAAATAGGGCCATCGCCGGCGCATTTGCGGGTTGCGGCGAAGGAGCCGTGGCAAGTAATATCATCAACACTACACATCGCTTGCAGTGGTGGGACTTTTCTCAAGTGAAATTACCAGATTTAAAGGACAGTGAGGCTCACGTGATCGCGCCAAGCTGTAAAATCCATAACGACGCCAGCTGCGACATTTCAAGCGATGGAAAGCTGCTGGCCACGTTTGTACCCAGTGCCCAGGGATTCCCGGACGATGGCGTTGTGGCGGTGTATTCTCTTGAGAAAACCACTCTAGGGCAGTGCGTGTTCTCCAAGAAATTTGGTCCAAATGCGATCTCCATCAGCCTGTCTCCATGTGATCGATATATCATGGTTGGCTTAGCGGCCAGGCGACTTCACTGGCATCTCACATCACGGCAGATGGTGGCACAGATCTTTCGGCTGACAGATAAAGACAGCTCGTCTGATACAGTGAAGCCGGCAGTTACTATCATGCACGAGTGTGAGCCTGATCGAAGAAGTCACGTGAGTGTCAATGCAGCGTTCTTCCATCCCCTGGTGGGGAATGGATTGGTTTACGGCACCAACCGAGGTCATCTGCACATGCGCCAGTTTGGACCAAGGTCCGTTTCCAGATATTCAAATCTTACTACCTGAATTAAATCCCAGCTGCTCGTGTTGCCGAATTTGGAAACAATGAATTATCAAGACATCCCCTAGGCCTGGATGCTGCTAAACTCACGCCACGACTAAAGCCGAGGAACAACTCTTGTTCGTTGTGGAATTTCCCGGAGGACCTTGAGGGTCTGCGACATTTCGACATTCAATAGGGGTCGATGTCTATCCTGGTGGTGGGAGAGAGAGGTGGTTGTCGATCAAATAAAGAGTTGGGGATAATGTGGCCGTGGGTTAATTCGTCACcccaacccccaccccctcaaaaaaaaaaaaaaagaaaaagaaaaaagacataaggggggaaaaaagaaaatataaacaaacaatgaaaaatCTGACTCAAAAAGAAAGAGGaggaaagcaaaaaaaaaaaaggaagaaagaaagaaagaaagacaaGGGAAGCGAAATAAACAGAATTTTTCCATGCCAAACATTATAAAAGATGTTCTTCAACTTATACCACTAAAAATATTCGTCTTTTCACCCATTACAAACATCTTCGAACACGTGTCATTGTTACTTTAAGACTTAATCAACTTCCTCTTTCTTACCCCTCCCCCGTTGAGTCATCTGACTCACACATCGTTCGTGGACTAATGTGGCGTCACCAGCGATCATTCTTCCCGTGTCAGCGGTGCTGCTCTTTGTTGCGCTCTAGCAAGTGCTTTGCAAACATTGTACATAAAGCTCATCgattaaataaattatttttccttTAATCTGGCGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E7FAG6	Activating molecule in BECN1-regulated autophagy protein 1A OS=Danio rerio OX=7955 GN=ambra1a PE=2 SV=2
Q9C0C7	Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens OX=9606 GN=AMBRA1 PE=1 SV=2
A2AH22	Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus OX=10090 GN=Ambra1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005875 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR052596 all species →	Family	Activating Molecule in BECN1-Regulated Autophagy	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22874 all species →	ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17985	AMBRA1; activating molecule in BECN1-regulated autophagy protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.