Gene detail

Detailed information of FUN_013451-T1 in Acropora pulchra

Genomic Location: ptg000008l:22692804...22744773
NR annotation: XP_044166759.1, LOW QUALITY PROTEIN: NLR family CARD domain-containing protein 3-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_013451-T1

ATGGCATCAAGCTCAAGACAACCTCAAGAATATGATAGAATCTTTAAATTCATCATTTTGGCTTCTGAGTGGGGATCCAGTAAGGGTGGACTTTCCACTATAAACAGAGAGTTGGCCATTCAGTTAGCCAAATTTCCCAATGTCAAAGTCACTTTCTTTTTGCCAAAATGCTCCCTAGAGAATAAGGACGAAGCGTTCAGCCATGGCATATCCATTGTTGAGGCAGAGAGACGACCAGGGTATGAAGAACTCGACTGGCTCAGTTTTCCACCAGAACATTTAGAGATGGATGTGGTTGTTGGTCATGGTGTGAAACTCGGTAAACAGGCTCAAGTTATCCGCAACTCCCACAAATGCAAGTGGGTGCAAGTGGTACACACAGACCCAGAGAAACTTGGAATGCACAAATGCTATGAGAATCCAATCTCAAAGGGAGGACAAAAGCACCATGTTGAGGTAGAGCTATGCCAGATGGCTGATTTGGTTGTTGGAGTTGGACCCAAGTTGACAGAAGCCTATCGCAAGTACCTTCGCTGGTGTAAAAAAGATCAAGATGTTTTTGAGTTCACTCCTGGTGTTCTTGTTGATTTTATCAGTGTTGAACATGCTCTTGATGAAAGGAAAAACTGCAGTGTTTTGGTATTTGGTCGTGGAGATGATGAAGATTTTGAGTTAAAAGGGTTTGATATAGCAGCAAGATCTGTTGCAGCATTGCATGATACAGATCTGGTTTTTGTGGGAGCACCTGATGGAAAAGAGCAGGAGATTGCAAAACGATTGCTTGATTCAGGAATTCCTAAAGGACATCTTACTGTGAGGGGTTTCAAGGATCGAGAAGCACTGAAGCGAGAATTCTGTGAGGCGGATCTTGTGCTGATGCCGTCAAGAACTGAAGGGTTTGGCTTGACAGGCCTGGAAGCTCTGTCAGCAGGGCTTCCAGTAATCGTCAGCAAGAACTCAGGGTTTGGAGAAGCTCTGGACGGTGTACCGTTTGGTTCTTCATTTGTTATAGATCCCGAAGATCCCGGTGCATGGACAGAAGCCATCAAAGATATCTGGAACAAAGGCAGACAGAGGCGACTTGACGAGACTAAGGTTCTGCGTGACTCCTATGCAAAGAAATACAGTTGGTGTGGACAGTGCAAAAATCTTCTTGATAAGATGGTCAGCCTACTTGAGAATAAACAAGATCCTTTTGGCGGGAGTCAGATCTCAGTCCAGGATGGTGTGGACGGGAGAAGCAGATCTATTGAATACAGAACAGGTTCTTCTGACAAGGATCAGATTTTACTCCAGGAAGGAGTGAACAGTGAAACAAGGAAATGCAGTGATCCGGAGAAAGCAGGTGATCCAAGCCACCTCATAAAGTGGATACAAGAAATTTATGCAAAGCGTGAAGGAGTCATTTTGCCAGTTCCTTGGTGTGATATATTCAGCTTTCAGCTCAAGAACATTTTCACCAAACTAAAGATAGTTTTAAAGCAAAAGACACACGGAAAAAACACAAAAGAAGTGACGAGCATGACAAGTATCTTTACACCACACAAAGATTGCCAACAACCACTGGTTGTGTTGATTGAAGGCGAGCCTGGCATTGGAAAAACCACCTACTGCCAGAAGCTAGCGTATGATTGGGCAACTAGTCAAGGTTGCGAATGGCATGAGTCTTTTCCAAGAGTTGAAGTGCTTCTGCTCCTTAGATGTCGTGAAATTGAATCGAGCTGTATATGGAAAGCAATTGAGGATCAAATTTTACCCGAGGGCATTGAACCTGACGGAAAAGTTACGTTTTTCCAGTTCCTCAAAAGGAACCCTTCCAAGGTGTTGTTGGTGCTCGATGGGTTAGATGAGGCAGACCCAGAAAAGCTGAAACTCTTTCGTAAACTGATTCAAAGAGAGCTGCTCCCTGGTTGTTATATTGTTCTTACATCTCGCCACGAAGCGGGGAGTAACATAAGGCCCTACACCGACACTCTGTTGGAGATTGTGGGATTCACGACAACTGATACGAAGTGTTTCATAACAAGGTACTTTCAACAATCAGCCAATCAACACTTTGCATGGACACTCATTGCAAAACTGGGGTCAGAGAATTTATATGAATTAACAAGAAACCCTCTGAACACCCTCCTTTTCTGTGTTATTTTTGAGGATCTTAACGGGGTTCTGCCAAACAACACAACAAAGCTTTACGTAGAGATGGTCCTCTTCGTTTTGAGACGTTATGAAAACAAGAACGGATTGTCAAGTAGTGGTAAAGACCTTCTTTTAGTTTACAAGAAGGAACTGATGATCCTTGGCAGAATGGCGCTAGATTCTCTACGCAAAGGAGAGCTGTATTTTGAAGACCATCAAGGCGATTTCAAGCAAAGCTTATTACCTAAATTTGGTTTTGTGTCCATCCAGGCTGGAGGTAGCAAGAGAGCACCTTGTCCCTGTTACGCATTTTTTCACAAGAGTTTTCAAGAATTCTTTTCCGCCTTTTTCCTTGCCTTTTCTATGATTGATGGTACAATGGACTGCAAGTCAGTGACTAATGAAGAATACGAAGTGGAACTAAGAGAAGAGTTCACATATATGGCGGGAATCGTAGCCATGCATTCGAAGGAAACTGCTGAGTCAATTGTTGAAAGCTTTATATCAGTTGTTAATTTGTCAGACCCTATATACCGTGGCTATCAGAAGCCCCTGAGATTGGCTTTACTCTTTATAGACGAATGCAAGCCTTTTTCAGAAACCATGTACACAGAATTAGCTCTTTCATTTGGCAAGGGTCTTGATCTGGTGGAGTTTACTGACTCTGGTTTGCGTTTTATATCCAAGTCATTACTCAGTACGCTATGCCTGGCCTTAAGAGTGAACACCTCTATTACTTCCTTGGATTTGTCAGATACCTCCATTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCATTGGATTTGTCTAAGACCGTGATTAAAACCGAGGGAGCTAATTCCTTATCTGAGGGCTTAAGAGTCAACACCTCTCTTTCTTCCTTGGATTTGTCAGATAACTCCGTTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCTTTGGATTTGTCTAAGAATGTGATTAAAACCGAGGGAGCTAATTCCTTATCTGAGGCCTTAAGAGTCAACACCTCTCTTACTTCCTTGGATTTGTCAGATAACTCCATTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCTTTGGATTTGTCTAAGAACGTGATTAAAACCGAGGGAGCTAATTCCTTATCTGAGGCCTTAAGAGTCAACACCTCTCTTACTTCCTTGGATTTGTCAGATAACTCTATTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCCATGGATTTGTCTTATAACTATATTGAGGAAGAGGGAGCTAAGTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCCTTGGATTTGTCTTATAACTCCCTTGGTCACGAGGGAGCTAATTCCCTATCTATGGCCTTAAGAGCACACACCTTTTTTACTTCTTTGCATTTGTCTCGTAACGCCATTTGTGCTGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCCATGGATTTGTCTTATAACTATATTGAGGAAGAGGGAGCTAAGTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCCTTGGATTTGTCATATAACTCTATTGGTGATAAGGGAGCTAATTCCCTATCTATGGCCTTAAGAGTAAACACATCTCTTACTTCTTTGGATTTGTCTTTTAACTCCATTGGTGATGAGGGAGCTATTTACCTATCTATGGCCTTAAGAGTAAACACATCTCTTACTTCCTTGGATTTGTCTCTTAACTCCATTCGTGCCGAGGGAGCTAATTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCCTTGGATTTGTCTTATTTCTTCATTGGCGATAAGCGAGCTAATTCCCTATCTAAAATAAGGTCTTAA

Transcript

FUN_013451-T1

CAACACGAATTGTTCTCAAAGGGACAGTTTTCCGTTGCTTCCGATATCTTTGGCTTTGATCTTATCCGTCGGTCTTCTCTTAGTACCACCAGCACGAACACGAGGCCTTACAAATGTCAAGATTCACTAAGGAACATCTGACTGGCAAACCACAGAAAATTTTGATGCACAGGTGAAGTGTAGTGGAATGAAATGTGTGAAAATTGAAAGTTTGCTGTGTTCCCCCATCAAGAATCATTTGAAGGCATAACAGGACTACTTCTTCCTCTGCTCAACACCGGAGTTTGTACACTTAGGTCCAAGATGCCCCTTCAGTCTGTGTGGTGTTGTAATTGACGTGCATTTTCATGGCATCAAGCTCAAGACAACCTCAAGAATATGATAGAATCTTTAAATTCATCATTTTGGCTTCTGAGTGGGGATCCAGTAAGGGTGGACTTTCCACTATAAACAGAGAGTTGGCCATTCAGTTAGCCAAATTTCCCAATGTCAAAGTCACTTTCTTTTTGCCAAAATGCTCCCTAGAGAATAAGGACGAAGCGTTCAGCCATGGCATATCCATTGTTGAGGCAGAGAGACGACCAGGGTATGAAGAACTCGACTGGCTCAGTTTTCCACCAGAACATTTAGAGATGGATGTGGTTGTTGGTCATGGTGTGAAACTCGGTAAACAGGCTCAAGTTATCCGCAACTCCCACAAATGCAAGTGGGTGCAAGTGGTACACACAGACCCAGAGAAACTTGGAATGCACAAATGCTATGAGAATCCAATCTCAAAGGGAGGACAAAAGCACCATGTTGAGGTAGAGCTATGCCAGATGGCTGATTTGGTTGTTGGAGTTGGACCCAAGTTGACAGAAGCCTATCGCAAGTACCTTCGCTGGTGTAAAAAAGATCAAGATGTTTTTGAGTTCACTCCTGGTGTTCTTGTTGATTTTATCAGTGTTGAACATGCTCTTGATGAAAGGAAAAACTGCAGTGTTTTGGTATTTGGTCGTGGAGATGATGAAGATTTTGAGTTAAAAGGGTTTGATATAGCAGCAAGATCTGTTGCAGCATTGCATGATACAGATCTGGTTTTTGTGGGAGCACCTGATGGAAAAGAGCAGGAGATTGCAAAACGATTGCTTGATTCAGGAATTCCTAAAGGACATCTTACTGTGAGGGGTTTCAAGGATCGAGAAGCACTGAAGCGAGAATTCTGTGAGGCGGATCTTGTGCTGATGCCGTCAAGAACTGAAGGGTTTGGCTTGACAGGCCTGGAAGCTCTGTCAGCAGGGCTTCCAGTAATCGTCAGCAAGAACTCAGGGTTTGGAGAAGCTCTGGACGGTGTACCGTTTGGTTCTTCATTTGTTATAGATCCCGAAGATCCCGGTGCATGGACAGAAGCCATCAAAGATATCTGGAACAAAGGCAGACAGAGGCGACTTGACGAGACTAAGGTTCTGCGTGACTCCTATGCAAAGAAATACAGTTGGTGTGGACAGTGCAAAAATCTTCTTGATAAGATGGTCAGCCTACTTGAGAATAAACAAGATCCTTTTGGCGGGAGTCAGATCTCAGTCCAGGATGGTGTGGACGGGAGAAGCAGATCTATTGAATACAGAACAGGTTCTTCTGACAAGGATCAGATTTTACTCCAGGAAGGAGTGAACAGTGAAACAAGGAAATGCAGTGATCCGGAGAAAGCAGGTGATCCAAGCCACCTCATAAAGTGGATACAAGAAATTTATGCAAAGCGTGAAGGAGTCATTTTGCCAGTTCCTTGGTGTGATATATTCAGCTTTCAGCTCAAGAACATTTTCACCAAACTAAAGATAGTTTTAAAGCAAAAGACACACGGAAAAAACACAAAAGAAGTGACGAGCATGACAAGTATCTTTACACCACACAAAGATTGCCAACAACCACTGGTTGTGTTGATTGAAGGCGAGCCTGGCATTGGAAAAACCACCTACTGCCAGAAGCTAGCGTATGATTGGGCAACTAGTCAAGGTTGCGAATGGCATGAGTCTTTTCCAAGAGTTGAAGTGCTTCTGCTCCTTAGATGTCGTGAAATTGAATCGAGCTGTATATGGAAAGCAATTGAGGATCAAATTTTACCCGAGGGCATTGAACCTGACGGAAAAGTTACGTTTTTCCAGTTCCTCAAAAGGAACCCTTCCAAGGTGTTGTTGGTGCTCGATGGGTTAGATGAGGCAGACCCAGAAAAGCTGAAACTCTTTCGTAAACTGATTCAAAGAGAGCTGCTCCCTGGTTGTTATATTGTTCTTACATCTCGCCACGAAGCGGGGAGTAACATAAGGCCCTACACCGACACTCTGTTGGAGATTGTGGGATTCACGACAACTGATACGAAGTGTTTCATAACAAGGTACTTTCAACAATCAGCCAATCAACACTTTGCATGGACACTCATTGCAAAACTGGGGTCAGAGAATTTATATGAATTAACAAGAAACCCTCTGAACACCCTCCTTTTCTGTGTTATTTTTGAGGATCTTAACGGGGTTCTGCCAAACAACACAACAAAGCTTTACGTAGAGATGGTCCTCTTCGTTTTGAGACGTTATGAAAACAAGAACGGATTGTCAAGTAGTGGTAAAGACCTTCTTTTAGTTTACAAGAAGGAACTGATGATCCTTGGCAGAATGGCGCTAGATTCTCTACGCAAAGGAGAGCTGTATTTTGAAGACCATCAAGGCGATTTCAAGCAAAGCTTATTACCTAAATTTGGTTTTGTGTCCATCCAGGCTGGAGGTAGCAAGAGAGCACCTTGTCCCTGTTACGCATTTTTTCACAAGAGTTTTCAAGAATTCTTTTCCGCCTTTTTCCTTGCCTTTTCTATGATTGATGGTACAATGGACTGCAAGTCAGTGACTAATGAAGAATACGAAGTGGAACTAAGAGAAGAGTTCACATATATGGCGGGAATCGTAGCCATGCATTCGAAGGAAACTGCTGAGTCAATTGTTGAAAGCTTTATATCAGTTGTTAATTTGTCAGACCCTATATACCGTGGCTATCAGAAGCCCCTGAGATTGGCTTTACTCTTTATAGACGAATGCAAGCCTTTTTCAGAAACCATGTACACAGAATTAGCTCTTTCATTTGGCAAGGGTCTTGATCTGGTGGAGTTTACTGACTCTGGTTTGCGTTTTATATCCAAGTCATTACTCAGTACGCTATGCCTGGCCTTAAGAGTGAACACCTCTATTACTTCCTTGGATTTGTCAGATACCTCCATTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCATTGGATTTGTCTAAGACCGTGATTAAAACCGAGGGAGCTAATTCCTTATCTGAGGGCTTAAGAGTCAACACCTCTCTTTCTTCCTTGGATTTGTCAGATAACTCCGTTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCTTTGGATTTGTCTAAGAATGTGATTAAAACCGAGGGAGCTAATTCCTTATCTGAGGCCTTAAGAGTCAACACCTCTCTTACTTCCTTGGATTTGTCAGATAACTCCATTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCTTTGGATTTGTCTAAGAACGTGATTAAAACCGAGGGAGCTAATTCCTTATCTGAGGCCTTAAGAGTCAACACCTCTCTTACTTCCTTGGATTTGTCAGATAACTCTATTGGTGATGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCCATGGATTTGTCTTATAACTATATTGAGGAAGAGGGAGCTAAGTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCCTTGGATTTGTCTTATAACTCCCTTGGTCACGAGGGAGCTAATTCCCTATCTATGGCCTTAAGAGCACACACCTTTTTTACTTCTTTGCATTTGTCTCGTAACGCCATTTGTGCTGAGGGAGCTAATTCCCTATCTAAGGCCTTAAGAGTAAACACCTCTCTTATTTCCATGGATTTGTCTTATAACTATATTGAGGAAGAGGGAGCTAAGTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCCTTGGATTTGTCATATAACTCTATTGGTGATAAGGGAGCTAATTCCCTATCTATGGCCTTAAGAGTAAACACATCTCTTACTTCTTTGGATTTGTCTTTTAACTCCATTGGTGATGAGGGAGCTATTTACCTATCTATGGCCTTAAGAGTAAACACATCTCTTACTTCCTTGGATTTGTCTCTTAACTCCATTCGTGCCGAGGGAGCTAATTCCCTATCTGAGGCCTTAAGAGTAAACACCTCTCTTACTTCCTTGGATTTGTCTTATTTCTTCATTGGCGATAAGCGAGCTAATTCCCTATCTAAAATAAGGTCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3VPR6	Protein NLRC5 OS=Mus musculus OX=10090 GN=Nlrc5 PE=1 SV=2
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1
Q59002	Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1607 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706 all species →	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR052201 all species →	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_013451-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.