Detailed information of FUN_013454-T1 in Siderastrea siderea

Genomic Location: contig_10:12232747...12233073
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_013454-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR022801
all species →		FamilySmall ribosomal subunit protein uS4Interproscan
IPR036986
all species →		Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11831
all species →		30S 40S RIBOSOMAL PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003735
all species →		Molecular Functionstructural constituent of ribosomeInterproscan
GO:0015935
all species →		Cellular Componentsmall ribosomal subunitInterproscan
GO:0019843
all species →		Molecular FunctionrRNA bindingInterproscan
GO:0022627
all species →		Cellular Componentcytosolic small ribosomal subunitInterproscan
GO:0042274
all species →		Biological Processribosomal small subunit biogenesisInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_013454-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_013454-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
31TPM > 0
7Conditions
1,486.1Max TPM
109.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 8 13.20 109.42
holobiont · low.pH Control.temp 20 5 4.98 62.79
holobiont · control.pH_high.temp 20 7 16.31 145.64
holobiont · control.pH Control.temp 19 5 27.03 317.73
Whole organism 4 4 1,366.22 1,486.13
unannotated 1 1 1,326.73 1,326.73
live coral tissue/skeleton 1 1 1,312.22 1,312.22

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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