Gene detail

Detailed information of FUN_013620-T1 in Acropora pulchra

Genomic Location: ptg000008l:24616932...24637994
NR annotation: XP_044178095.1, urease subunit alpha-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_013620-T1

ATGAAGCTCAGTCCACGGGAGCTAGAGGGACTTCTGATTCACCAAACTGGCTTTTTGGCGCAAAAGCGGCTTGCAAGAGGACTTAGACTCAATCACCCCGAGTCTGTCGCCCTCATCGCATCCCAGCTCAATGAATTTATCAGAGATGGGAAGACTGTTGCAGAGTTGATGAATTTGGGAAAACAGATGTTAGGAATGAAACAAGTGCTCCCTGGGGTAGCAGACCTCATCAGTGAGGTGCAAGTGGAGGGAACATTTCCTGATGGAACTAAATTAGTCACAGTTCACCAGCCCATTTGTCAAGACAATGGTGATTTGAACCTTGCTCTTTATGGAAGCTTTCTCCCTGTTCCACCCGTAGAGAAGTTTGCTTCAGCAAGTGCAAATGTTGTTCCACTGGAAAACTCAGCCCCAGGCTCTTTGGTTCCTTCTACATCTGGTGACATTACTTTAAATGCTGGAAGAATAACAAAAAAATTGAAAGTCACAAGCTTGTGCGACCGTCCTATTCAGGTGGGGAGTCATTATCACTTCATTGAAGCAAACAAGTATCTTCAATTTGACAGAGCAGCTTCTTATGGAATGCGACTGAACATTGCTGCTGGAACGGCTGTTCGATTTGAACCAGGAGATACCAAGACTGTTGAGCTTGTTGACATCGCTGGCAACAGAGTTGTGCGAGGAGGAAATGGCTTAGTTGACGGTCCTGCTTTGCCTGAAAACTTGGAAAAGGTGATGAAAAAAATTGCTGATCAAGGATTTGCCCACAAGCTGCAGGATGATGTGGTTACTTCCACCAGCACTGCCACCATTCCTAGAGCACTGTACACTGACATTTTTGGTCCAACTGTTGGGGATAAGGTCTATCTTGGTGACAGCACCCTTGTTGTTGAAGTGGAGAAGGATTTTACAGTTTATGGAGATGAACTGAAGTTTGGAGGGGGCAAGGTTTTAAGAGAGGGTATGGGACAAGCTGCAAATGTAACCAAGGACACAGCTCTAGACACTGTTATCACTAATGCACTGATTGTTGATGCTGTGGCTGGCATCATCAAGGCAGATGTTGGAATCAAGGATGGCATTATTTCAGCTATTGGCAAAGGTGGTAATCCAGATGTTATGGCAGGGGTTACTAAGGGAATGGTCTGTGGAGTAGGAACAGAAGTAATAGCAGGAGAAGGACTGATCTTGACAGCTGGAGGTTTTGATGCTCATATTCACTTCACTTGCCCTCAACTTGCTGAGGAGGCCATTGCATCTGGACTCACAACAATGGTGGGAGGAGGAACAGGTCCTGCCACTGGAACATGTGCAACAACTTGCACCCCAGGACCAAACCACATCAAAGCAATGATCCAGAGTACAGACAGCTTCCCTCTAAATTTTGGCTTTACAGGAAAGGGGAATACATCTAAGTCAAGTGGAGTTGCAGAGGAGTTAGTGGAACAGATCAAAGCTGGTGCTATTGGGTTGAAACTTCACGAGGACTGGGGAACCACCCCGGCAGCCATTGATTGTGCTCTGACCGCTGCTGAGAAACATGACGTGCAGATCACTATTCATACCGATACTCTTAATGAATCGGCTTGTGTTGAACAGTCGATTGAAGCATTTAAGGGTCGGACAATCCACACATATCACTCAGAGGGTGCAGGTGGTGGACACGCCCCAGATATCATCAAGGTTTGCTCAGAGGCGAATGTGATTCCATCTTCAACAAATCCCACCCGACCATTTACAGTCAACACTATTGACGAGCACTTGGACATGCTGATGGTCTGTCACCATCTTGATAATAATCTGAAAGAAGATGTGGCATTTGCTGAGTCCCGAATCAGAGCAGAAACCATTGCTGCTGAAGATATACTGCATGATATGGGAGCCATCAGCATTGTTTCCTCAGATTCCCAGGCTATGGGTCGAGTTGGTGAGGTCGTATGTCGCACATGGCAAACAGCTGATAAAATGAAGAAGCTAAGAGGAAGGCTTGCAGATGAAAAGGGTGAAAATGATAACATCAGAGTTCGCCGTTATGTTGCAAAATACACCATAAATCCAGCTTTGGCTCATGGAATGTCACACTTCATTGGGTCCGTGGAGGTTGGTAAACTGGCTGATTTGGTCCTGTGGCAGCCTGCACTTTTTGGTGCAAAACCTGAAATTGTGGTAAAAGGAGGGCAAATTGCTTGGTCTCAAATGGGAAATCCTAATGCATCCATCCCAACACCACAACCTGTCAGACCACGCCCCATGTTTGGAGCCTTTGGAGCTGCTGTTGGTTCTAACTCAGTTGTCTTCATCAGTCAGGAATGTGATAAAAGTAAGGTTTGTGACACATATGGGATCAAAAAGAGAACTGTCGCAGTGAAACGTTGTCGCACTGTAAAGAAGAGTGATATGATTCTCAACAACTATTTGCCCAAACTAACAGTTGATCCTCAGACCTACAAGGTGCACATTGTAGACAGCAAAGATCCTTCAAAGAAAGAGCTCATTACTTGTGATCCAGCATCAGTCATACCCATGGCCCAGAGATTCTTCATATTTTAG

Transcript

FUN_013620-T1

CGGTTGTTTTTGTGCTGGGAGCTAAGATTGCGGTGAGCAAAGTGCAGAGGAGAAGCTAACAAAATTTGCCAACATGAAGCTCAGTCCACGGGAGCTAGAGGGACTTCTGATTCACCAAACTGGCTTTTTGGCGCAAAAGCGGCTTGCAAGAGGACTTAGACTCAATCACCCCGAGTCTGTCGCCCTCATCGCATCCCAGCTCAATGAATTTATCAGAGATGGGAAGACTGTTGCAGAGTTGATGAATTTGGGAAAACAGATGTTAGGAATGAAACAAGTGCTCCCTGGGGTAGCAGACCTCATCAGTGAGGTGCAAGTGGAGGGAACATTTCCTGATGGAACTAAATTAGTCACAGTTCACCAGCCCATTTGTCAAGACAATGGTGATTTGAACCTTGCTCTTTATGGAAGCTTTCTCCCTGTTCCACCCGTAGAGAAGTTTGCTTCAGCAAGTGCAAATGTTGTTCCACTGGAAAACTCAGCCCCAGGCTCTTTGGTTCCTTCTACATCTGGTGACATTACTTTAAATGCTGGAAGAATAACAAAAAAATTGAAAGTCACAAGCTTGTGCGACCGTCCTATTCAGGTGGGGAGTCATTATCACTTCATTGAAGCAAACAAGTATCTTCAATTTGACAGAGCAGCTTCTTATGGAATGCGACTGAACATTGCTGCTGGAACGGCTGTTCGATTTGAACCAGGAGATACCAAGACTGTTGAGCTTGTTGACATCGCTGGCAACAGAGTTGTGCGAGGAGGAAATGGCTTAGTTGACGGTCCTGCTTTGCCTGAAAACTTGGAAAAGGTGATGAAAAAAATTGCTGATCAAGGATTTGCCCACAAGCTGCAGGATGATGTGGTTACTTCCACCAGCACTGCCACCATTCCTAGAGCACTGTACACTGACATTTTTGGTCCAACTGTTGGGGATAAGGTCTATCTTGGTGACAGCACCCTTGTTGTTGAAGTGGAGAAGGATTTTACAGTTTATGGAGATGAACTGAAGTTTGGAGGGGGCAAGGTTTTAAGAGAGGGTATGGGACAAGCTGCAAATGTAACCAAGGACACAGCTCTAGACACTGTTATCACTAATGCACTGATTGTTGATGCTGTGGCTGGCATCATCAAGGCAGATGTTGGAATCAAGGATGGCATTATTTCAGCTATTGGCAAAGGTGGTAATCCAGATGTTATGGCAGGGGTTACTAAGGGAATGGTCTGTGGAGTAGGAACAGAAGTAATAGCAGGAGAAGGACTGATCTTGACAGCTGGAGGTTTTGATGCTCATATTCACTTCACTTGCCCTCAACTTGCTGAGGAGGCCATTGCATCTGGACTCACAACAATGGTGGGAGGAGGAACAGGTCCTGCCACTGGAACATGTGCAACAACTTGCACCCCAGGACCAAACCACATCAAAGCAATGATCCAGAGTACAGACAGCTTCCCTCTAAATTTTGGCTTTACAGGAAAGGGGAATACATCTAAGTCAAGTGGAGTTGCAGAGGAGTTAGTGGAACAGATCAAAGCTGGTGCTATTGGGTTGAAACTTCACGAGGACTGGGGAACCACCCCGGCAGCCATTGATTGTGCTCTGACCGCTGCTGAGAAACATGACGTGCAGATCACTATTCATACCGATACTCTTAATGAATCGGCTTGTGTTGAACAGTCGATTGAAGCATTTAAGGGTCGGACAATCCACACATATCACTCAGAGGGTGCAGGTGGTGGACACGCCCCAGATATCATCAAGGTTTGCTCAGAGGCGAATGTGATTCCATCTTCAACAAATCCCACCCGACCATTTACAGTCAACACTATTGACGAGCACTTGGACATGCTGATGGTCTGTCACCATCTTGATAATAATCTGAAAGAAGATGTGGCATTTGCTGAGTCCCGAATCAGAGCAGAAACCATTGCTGCTGAAGATATACTGCATGATATGGGAGCCATCAGCATTGTTTCCTCAGATTCCCAGGCTATGGGTCGAGTTGGTGAGGTCGTATGTCGCACATGGCAAACAGCTGATAAAATGAAGAAGCTAAGAGGAAGGCTTGCAGATGAAAAGGGTGAAAATGATAACATCAGAGTTCGCCGTTATGTTGCAAAATACACCATAAATCCAGCTTTGGCTCATGGAATGTCACACTTCATTGGGTCCGTGGAGGTTGGTAAACTGGCTGATTTGGTCCTGTGGCAGCCTGCACTTTTTGGTGCAAAACCTGAAATTGTGGTAAAAGGAGGGCAAATTGCTTGGTCTCAAATGGGAAATCCTAATGCATCCATCCCAACACCACAACCTGTCAGACCACGCCCCATGTTTGGAGCCTTTGGAGCTGCTGTTGGTTCTAACTCAGTTGTCTTCATCAGTCAGGAATGTGATAAAAGTAAGGTTTGTGACACATATGGGATCAAAAAGAGAACTGTCGCAGTGAAACGTTGTCGCACTGTAAAGAAGAGTGATATGATTCTCAACAACTATTTGCCCAAACTAACAGTTGATCCTCAGACCTACAAGGTGCACATTGTAGACAGCAAAGATCCTTCAAAGAAAGAGCTCATTACTTGTGATCCAGCATCAGTCATACCCATGGCCCAGAGATTCTTCATATTTTAGGGAATTCCATGGGTGCAAAAGTGACGAGTCTTTCACAGTAGCCACAGGGAGATAAAAAGCAATGTAGAAATGAGTCATGCATCTGCATTTCTTAGCAAACAGAGAAGGAGTAAATGTGCACAATATTTACCTAAATTCACAGTTATGCAGCCAAAAGAGGTAAAGCAGAACAAAACTGCCATATCTAGTAGTTTCATCTTGATTCTGCTTGTCGAAATGTATGAGTTTATGTTTCCTAGAAACAAGGTAACTGCAACCATAATAGATTCTGTACTAGAGGAGATGTTTAGGGTTTCTTTAATTAATTTGAAGGAAAATTTGTAGTCAGATTTGCAGTCTGAGCGGGCATTAACTTGTTAATGAAATTTATGTAATCAATTCAAACCATGTGATATTGTGTTGATGTTGGGTATGCTAAAATGAGATAAAAATATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B9GCH9	Urease OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0234800 PE=3 SV=2
E0ZS48	Urease OS=Oryza sativa subsp. indica OX=39946 PE=1 SV=1
P08298	Urease OS=Glycine max OX=3847 GN=EU4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009904 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00699 all species →	Urease_beta	Urease beta subunit	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF00547 all species →	Urease_gamma	Urease, gamma subunit	Domain	Interproscan
PF00449 all species →	Urease_alpha	Urease alpha-subunit, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036461 all species →	Homologous_superfamily	Urease, beta subunit superfamily	Interproscan
IPR005848 all species →	Family	Urease, alpha subunit	Interproscan
IPR002019 all species →	Family	Urease, beta subunit-like	Interproscan
IPR050112 all species →	Family	Urease Alpha Subunit	Interproscan
IPR017951 all species →	Domain	Urease alpha subunit, C-terminal	Interproscan
IPR029754 all species →	Binding_site	Urease nickel binding site	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR017950 all species →	Active_site	Urease active site	Interproscan
IPR002026 all species →	Family	Urease, gamma/gamma-beta subunit	Interproscan
IPR036463 all species →	Homologous_superfamily	Urease, gamma subunit superfamily	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR008221 all species →	Family	Urease	Interproscan
IPR011612 all species →	Domain	Urease alpha-subunit, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43440 all species →	UREASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009039 all species →	Molecular Function	urease activity	Interproscan
GO:0016151 all species →	Molecular Function	nickel cation binding	Interproscan
GO:0035550 all species →	Cellular Component	urease complex	Interproscan
GO:0043419 all species →	Biological Process	urea catabolic process	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01427	URE; urease	EC:3.5.1.5	Atrazine degradation	ko00791	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.