Gene detail

Detailed information of FUN_013628-T1 in Acropora pulchra

Genomic Location: ptg000008l:24701870...24712610
NR annotation: XP_029203378.2, natterin-4-like isoform X2 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_013628-T1

ATGGCTCCTATAAAATTTGTGCGTGTAGTCGCTGGTATAGCTACAGGGACGTTGCTAACTCTAAAGGCATTGCCACATGTTCATCCTGATAAATTTGTCAGGGGAGTCATGGAACTTAAAGTCAACTCAACGGAAATGGAAGTACCGTCCCGTTGCAAGGAGCAACTTGAAAGAGTTGCCCCTAAGCTTGGAATCACGGATAAACGCGATCAGGAAAAAATCAGGTTCTTCGTGTCCAAATCTCTTTTTCCGTTGTCTGCTGGAGCTACGTGGCTTCCAAATGGAGCTGTCATTGGTGTGCCAATATCGTTCTTCTTTAAACACGAACAAGACATCGCCAGATTTAAACAGATTATTGACACTAAAGGCGGACACAATCCCTTCTTTTTAGATGGCAAATTCGGAAGGAACTTGAAGGACACACTTTTGATGTCGGATGATAACATCGCGTTTCTCATAGGCCATGAGCTTAGCCATATCAAACGTGTTGATTTAGCCCCGCAGATCTTGTTAGCGCCTTCATGGCTTTACGTAACATTTGAAATTGCTAACTTTACCAGGAGACTCGTTCCAAGAGCTCCAGTCGTTGCCGATGGTCTTCTCAAGATCGCTGTGTGTTTGTTGAGTTATTTTTGCTACTGGAAAGCGCAAGGTTATCTGAATCATTACCAGGAATTCAAAGCTGATGAGATTTGTGCCAGAACAGACTTAAATGTTGCAGCTGGTGGTGTTGATTGGATGTTAAAAACAATGAAGTTTAATACCTTTATGAAAGGTTTACTTGAAAGAAGCCCAAAGAGAGCTCAGTCATCAAGAAAAATGAGGCCCGAAGGATATACTCATCCAAAATTGTTAGATAGGTTAAGGCAACTTGAAACTATTGTTTATGGAAAGATGAAAGTTCAATGGATTTGTTGCCCTTGGAAAGGACTGTTTGAGTTCATGTTGTTGAGGATGCATTTGTCAAACTTTGAAAACGAAGTGATCTTCAGAATTTCTAGGATTGTGTGCCATACAAAAAGACTATCCACTATGCTTTCATATGTGGAATGCACGACGGGAGATAAACCACCAAGCAATGCCGTTGAAGCAGGATTTGATGATGGGCCTTCTTATCATGCGAGGGGACTGGTAGAAGGCCTGACTGTCCCAGGCAAAGTATGCGTCAGGTCTGAAAATGATCTTCGCCTGGTTGAAGCCTGCATTCCATATGGATCAGAAGAACATCTGGTCCACAGCTTTGAAGTACTTACAGTGAATGACCCCTCAGCACTGACATATGAAAGGTGCAAGACTGGAGATCGGCCTCCAGATAATGCTGTCCAAGGAGGTTTTGATGGAGGCCCTACCTATCATGCAAGAGGTGAGGTAGAAGGCAAGATTATTCCGGGTAAAGCTGACGTGAACGTAGCAAGGGATGACTTTTACTTGAAAGGAGCGTGCATCCCCTATGGCTCAAGTGAACATCGAATTCATGATTTCCAAGTGCTTGTCATGGCCGACAAAATTGAGCACGTGGAGTTCCACTGTGATAGAGGAAAACTGCTGGCTACGAATCCGAAGGTTTTTGCTGTTCAGGAACTTTCCAACAATACCAGCCAGCCACAGTCAAGGGAGCTCTCTTACAGCGAGACAGTAAGTAGCACAAGCAGTTTCACACATCAATGGGGAATATCAGTTTCCAGATCGGCGCAATTCAGCGCCAAGTTGCCGACTGTAGCCGAAGGGAAGATAACTACCACGACAACTGGGTCTGTGTCCCTTATCTGGGGAAGGACTGAAACGTTTCAGAAGACCGTTTCTGGAAAGCACCCTGTTGTAGCCGCGCCGTTTACAAAGGTGATATGTGAGGTTGTAGCTAACGAAGCAACAATGGACGTGCCCTACACTATGTACTTCAAGTCTGGTAAAACATCCGGTGGGAGGTGGAAAGGAGTTTCAACTTGGGATGTGAAAACGTCTTTTAAAGAAGAGAAGCTAAACCCACTCATGATGAAGTAA

Transcript

FUN_013628-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01435 all species →	Peptidase_M48	Peptidase family M48	Domain	Interproscan
PF03318 all species →	ETX_MTX2	Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2	Family	Interproscan
PF11901 all species →	DM9	DM9 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006616 all species →	Repeat	DM9 repeat	Interproscan
IPR001915 all species →	Domain	Peptidase M48	Interproscan
IPR004991 all species →	Family	Aerolysin-like toxin	Interproscan
IPR026620 all species →	Family	Transmembrane protein 177	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21824 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_013628-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.