Genomic Location: contig_20:5073735...5124667
NR annotation: XP_020611984.1, E3 ubiquitin-protein ligase TRIM71-like [Orbicella faveolata]
| CDS | |||||
| FUN_013652-T1 | |||||
| Transcript |
| FUN_013652-T1 |
| Protein |
| FUN_013652-T1 |
| Uniprot term | Description | ||||
|---|---|---|---|---|---|
| Q5C8T8 | Tripartite motif-containing protein 5 OS=Pongo abelii OX=9601 GN=TRIM5 PE=2 SV=1 | ||||
| Q2YEM9 | Tripartite motif-containing protein 5 OS=Pongo pygmaeus OX=9600 GN=TRIM5 PE=2 SV=1 | ||||
| Q5C8U1 | Tripartite motif-containing protein 5 OS=Saguinus labiatus OX=78454 GN=TRIM5 PE=2 SV=1 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | zf-C2H2 |
| Ubiquitin Family | E3|E3 activity RING|RING |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01436 | NHL | NHL repeat | Repeat | Interproscan |
| PF17170 | DUF5128 | 6-bladed beta-propeller | Repeat | Interproscan |
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | Domain | Interproscan |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | Domain | Interproscan |
| PF00643 | zf-B_box | B-box zinc finger | Domain | Interproscan |
| PF00630 | Filamin | Filamin/ABP280 repeat | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013087 | Domain | Zinc finger C2H2-type | Interproscan |
| IPR001258 | Repeat | NHL repeat | Interproscan |
| IPR036236 | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR017907 | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR011042 | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR000315 | Domain | B-box-type zinc finger | Interproscan |
| IPR001298 | Repeat | Filamin/ABP280 repeat | Interproscan |
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR017868 | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR050589 | Family | Ikaros C2H2-type zinc-finger | Interproscan |
| IPR027370 | Domain | Zinc finger, RING-type, eukaryotic | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR014756 | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24404 | ZINC FINGER PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0000978 | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0003700 | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K09228 | KRAB; KRAB domain-containing zinc finger protein | - | Transcription factors | ko03000 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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