Gene detail

Detailed information of FUN_013838-T1 in Siderastrea siderea

Genomic Location: contig_11:1713861...1727103
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_013838-T1

ATGCAAGTTTATCTGGGGATTACAGCAGTTTTATTCAGCATTTTGCAAGTTGACAGTGCAAGGACAATCTGTTCACAATCTACACACTACACAATATTCAACGACAGTAATCCGAATGCCAAGGAAACATGCAGACAATGTCCAATATGCCCACCTGGACAAGGACTACTGATTCAATGTGGATCCAGGGTACCAGTTGGTACCTCCACTGACTGCCAACCATGTGAGGCCAACAAATCTTATTCTGATAAAAACGATACATCCCACTGCAAGCCATGTAATCTATGTGGTTTAAAGGAAGTGCTGCAGCATTGCACACCGCTACAAAACCGCAAGTGTGGAGGCTGCCCACAAGGATATTATTTAGAGCCTCATCTTGATGCATGTATGGGCAAGACAAAGAGCAAAAGTAGAACTACCACATCAGTAACCACAGCTACACCACTTTTCCCTAAAACTACATTCACCGCCGCTAGTTCTGCAGGCACAGCTGAGATAAGTGTTAGTGAGATTCCAGGTACTAATGCCACTACAACAGATCACAATCACCTGCAGCCTAGTACACCTATAAATGACAAACAGATAACTACTGTTAGATCAGCTGCTGAAGACCCCAGTTTAACTGGAAGCAATAGTTTACCAGCAGGCAAGGATCATGCAGATTCTAAACACAAACAAACTCTACCAGTAGTTATTGTTGTATGTCTATTTGGATCACTTCCGATTGTCTTTGGCATTTTCCTCATCTTAACTGCAGTCAAGCGAACGAGATCTTCAGGCAGGCTTCACAACTATGAAAATGTGGAGGAAGGTGAAAGACTAGAAATGACAGAACTGAGAGCTAATGGTCTGGCCATCAACAACTCCAATGATCACAGCAGAACACCATTGTTAGTCGAAAATGAAAGTACTGCGAGCTCTGCTATATCCTCGACTGAAAGTGTTAATGACAATCAAAACGAGGTATCCACCCACGAAAATGTCGACGTTGATGTGAATCGTATTCCTGAAGGTGAAAGACTAGAAATGACAGAACTGAGAGCTAATGGTCTGGCCAACAACAACTCCAATGATCACAGCAGAACACCATTGTTAGTCGAAAATGAAAGTACTGCGAGCTCTACTATATCCTTGACTGAAAGTGTTAATGATAATCAAAACGAGGTATCCACCCACGAAAATGTCGACGTTGATGTGAATCGTATTCCTGAAGttcGACTTGTCTCTGACATGGAGTGGTTGTGTCATAATGATGGTGTTTCACGGATGTTATTTCTTGTCCAAAAGGAGCTTGATCTTCGCGAGACTCCACAAAAGAAAACATGGCACAGCGTTGGGAGGGCTTTAGGCGTCAGCACTAACGAATTGGAAACGATAAACTCTTTCTGTTACCCAGCAGAGAGGAGTCCAACAGAAAGTCTTCTCGAAGTTTTTAAAGCCAGAGGTAAGAGAGAGCCTACAATGAGAAAGTTCGTCGAGGCACTTATCGCGTGTGACAGAAAAGACATCGCTCGAACTATTTGCAATTGGCCATGGGAGCTTGAAGAGAACACAAATCGACCGTCATAAGCCAATGACATTGCGTTTGGGAGATAGATATCGCTTATGGTGTAAATCATACACGCCTTTCGGAGAAAACATCGCCAGGCCACTTCAGTCATACCCACGTCATACCCGAGTGACGTTTTTAAAATACTAAGTGGTTCCTATGTCCCGGACTGGAGTTGGTAGATAAATGGGGTGACATACTTACAGCAAAGTTACATTTTCAGACATAGTTAATAAGACATCAATAACTGCCTGTGTTCATGCACGGCTCTCTCTTCTCTGGTACTCAAGTTTTGGAGTTACAACTCGTTGCTGTCAACAAGGGGGAAGGCACACAGAGAGGGGTTTGGACAATTAGATCACAAGTCGCCTTAAAATCAGTTGTAATAGACCTTTGTCACACGGCGGCCATGTTGAGTCCCCGGAGAATAgaaagctttgtttttgcacgtctaaactcgttctcaagtttttcactgcgaggctagacgtgcaaaatgttttgtctTTATGCTAAATAGTAGCCACATGCATGAAAAAGGTCTGTGGCAAAGGCAATTTATAGTGGAGAAAAAACGTTTTGCAATCACACATATTCAACATAAATGATCTCGTTCAGCCGGCAAGAGGATTTTTCTTAGAACATGAACAACGTCTATTTTGTAAATAAGATATTTTATAGATAAAAACGTCTTTGAAGAACGAAGGAATGAACGAGCGTGTGCATGTGAATCAAAGAATGAGGACAGCGGGAGAACGTGAAGAGGGGTGAGCCTTGCACGGTTCGCAAGCGAGAATTCGCGATTTTGACGACTCTTACTTCCGTGTAGTGGTAATGAGAACAAAAACGCGCGACCCATTTTGTTGTCAAGCCAATTCAACAAAAACCTCTGTTAGTATGGTGTTTAGTTTTTGTTCTAAGGTTTTCAAAGTTTGTAGCTTTTGAAGTTTTTTGtagttttgtagtttttgtagtttgataggaaaaaagaaaatgttgatGCTATACATAGTTTTTCAGTATAAATCATATATATAGTTAAGAGCTGAGGACTTTTTAAGGTGCAAATTACAAAGTGCTGTCAATTTCTTGTTGTCTGTCGAtgtttagactgcgagcagtctctcttttgctctaaaatccgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF00020 all species →	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368 all species →	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR047526 all species →	Family	Tumor necrosis factor receptor superfamily member 19/27/EDAR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12120 all species →	TNFR-CYS DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0046330 all species →	Biological Process	positive regulation of JNK cascade	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_013838-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.