Gene detail

Detailed information of FUN_013842-T1 in Colpophyllia natans

Genomic Location: contig_21:2004622...2010817
NR annotation: XP_020624451.1, charged multivesicular body protein 1b-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_013842-T1

ATGTCGAGTCAGATGGAAAAACATCTCTTTAATTTAAAGTTTGCTGCCAAGAATTTAGCAAGAAACTCCAAGAAAtgtgaaaaagaagaaaaagcagAGAAGTTAAAGTTAAAGAAGGCcatttcaaaaggaaatttAGAGGGAGCCAAAATACATGCTGAAAATTCAATTAGACAAAAGAATCAGGCATTGAATTTCATGCGACTAAGTGCAAGAATTGATGCCACAGCTTCACGAGTCCAGACTGCTGTTACCATGAAACAGGTGACTGGATCAATGTCTGGTGTAGTGAAATCAATGGATTCAGCCCTGAGATCTATGAACTTAGAAAAGGTATCTGCTCTGATGGACAAGTTTGAACAACAGTTTGAGCACCTTGATGTACAGTCCAGCTATATGGAAAATGCAATGAGTGATACCACGACTCTCTCAATACCACAGgGACAAGTTGATAACCTTATGCAACAAGTTGCTGATGAAGCAGGGTAGGCTGGATGTTTTTATGTTATGGTTTAATATGTGGCTGATGAATATTACAAAAATTCAGCTcaaaaatcaatgaaattaGTGTTGAGAGAATCAAAATGTTTCCATTTGTTCTggtgtcatgtacatgtatgactctgtggcttatgatccagtgacaAATACATTGTCAGAGTCAGAAGAAGAAGTAGAAAGAAGCCATGATCATCCGAATGCTATAAATTTCCTATAAATAATTTTCAGTAGATCATAAGTGACAAAGTAATAGTAGGCTTGGGGTTCTGCTTCTGCCTCCCTCTGTTTGATTTTTACTTGCCAGAATGTTCTTCTGCACTTCTGGTTATTGCTCCGACTCTGACTCTGTCCCTGGTGAAAACAAGCATTAAGAATTATGCAATTCTTACCCCAAAATAAATTCATCATGTAGGTTGGAATTAAACATGGAGCTACCATCTGGACAACAAAGTCAGCCAATCGGTACAGCCTCCACCGCTTCTGCCGAACAGGATGAGTTGTCACAGAGGCTGGCAAAACTTCGACAATCTTAAAGAGTTTCACAAGTTGGCAATAACATTAGCAGAATTTTTCCTAGCTATGCAGTAACCTGTTATCCAAAATACTGACCATAAAATCAAGAATGCTTAACTCTATGTATACTGACTTACAATGCCTGTTAAATCATATGATCAATGCAGCAAATCTCTCATTAGGTCTTATTAACCAGTTTGTTTTATACACGACGGAAATTACCCTTCTGTTGTTTCTATATGGACCTCACTCCACTTGATGTGCATTGTCAAGAACTCACAGACATCAATATTCTTTAAAACTCAGTTACTAAGATATCTGTATGGCTACATATTTGGCATATTAGGTCCTAAAAAACCCTTGATTTCTCCAAGTCAGATTCCTCATTATCCTttctattttcaaattttgttagGTAAATGCTTGTCAATATTGCTGTAAACCCTTTTGACTTTTCTGTGGGGAAGTTTCATTTTTCGAAAATCTGTTGCTGTAAAATAACAAATACAGATAATTACCGGTATGTTTAGAAGAGTGAATTACTTAGTCTCACTGTTTGGTAAGTTAactaaaaataaaggaaagTTGGCATTTTACATTAAACACAATCAACAGTTCGCTGAGTATAGCTGATACATTTTAAAAGACTTAATTGAATTTTACAAATAGCCGAAAATGTTGTATTTCGAATAAACATGACTTTCAAACAATCACAAAAATTGATACCCAGCTCAAAAAACTTTCACAATCTCAAAAAATTAGTTCCCACAAAAATTGATCATGAGTATACTTCCTTGTAGGAATTAATATATAACAAAAAGTATACTTAATTTCTGCAAGGGTAAACTCCCACCACAGGTACCGACACGGTAACCTGAGTTGCATGCATCTCCTTGAATCACTGGTGCACTACTGAAAAGGGACACAACGTGGCTATGGGCGGCCGttaccaccaaaaatacaactatgttaaatagatcagcaacaacaaagataatctaggggtgagttgcagaatggcataactaataaagaaatggcatagccaaattacaaatggttgagctatccttgatgaattaagacaacctaaacataaatagctcagccaaataataaaCAGTCTAGgtggaacacgaaattgtggactagactagttcaaatacgaatagctcagctctcgtatgcaatacagcacagaacaaaacgaaatgatcaggcaaacaagaaaaattcaaaatgggttagctcacgatgctgaaatgactgaaatagatcagtcaaatgtcaaatggttcggcGTAAACAcgagcagtgcagcttttcgcgaaataaaCCAGTCAAATGTTGAATGG

Protein

Uniprot

Uniprot term	Description
Q5ZKX1	Charged multivesicular body protein 1b OS=Gallus gallus OX=9031 GN=CHMP1B PE=2 SV=1
Q5E994	Charged multivesicular body protein 1b OS=Bos taurus OX=9913 GN=CHMP1B PE=2 SV=1
Q7SZB5	Charged multivesicular body protein 1b OS=Xenopus laevis OX=8355 GN=chmp1b PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03357	Snf7	Snf7	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005024	Family	Snf7 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000815	Cellular Component	ESCRT III complex	Interproscan
GO:0005771	Cellular Component	multivesicular body	Interproscan
GO:0007034	Biological Process	vacuolar transport	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0032509	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0045324	Biological Process	late endosome to vacuole transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12197	CHMP1, VPS46, DID2; charged multivesicular body protein 1	-	Exosome	ko04147	deepkoala