Detailed information of FUN_014268-T2 in Dendrogyra cylindrus

Genomic Location: contig_22:2305281...2341148
NR annotation: XP_022795630.1, spectrin beta chain, non-erythrocytic 1-like isoform X1 [Stylophora pistillata]
Species Dendrogyra cylindrus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q01082Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTBN1 PE=1 SV=2
Q62261Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptbn1 PE=1 SV=2
Q00963Spectrin beta chain OS=Drosophila melanogaster OX=7227 GN=beta-Spec PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002076 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00435
all species →		SpectrinSpectrin repeatDomainInterproscan
PF15410
all species →		PH_9Pleckstrin homology domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018159
all species →		RepeatSpectrin/alpha-actininInterproscan
IPR002017
all species →		RepeatSpectrin repeatInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001605
all species →		DomainPleckstrin homology domain, spectrin-typeInterproscan
IPR001849
all species →		DomainPleckstrin homology domainInterproscan
IPR041681
all species →		DomainPleckstrin homology domain 9Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11915
all species →		SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005543
all species →		Molecular Functionphospholipid bindingInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0030036
all species →		Biological Processactin cytoskeleton organizationInterproscan
GO:0030054
all species →		Cellular Componentcell junctionInterproscan
GO:0030864
all species →		Cellular Componentcortical actin cytoskeletonInterproscan
GO:0042995
all species →		Cellular Componentcell projectionInterproscan
GO:0051015
all species →		Molecular Functionactin filament bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_014268-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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