Gene detail

Detailed information of FUN_014400-T1 in Siderastrea siderea

Genomic Location: contig_11:11158483...11186470
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_014400-T1

ATGGCGGACGAAGAAGAAGCCGAGTCTCGACCGAGAGCTGACCCGTACGGACCCCGGTTAATTGAACTACATCGCGGAGAAAATGGATTTGGATTTAATGTACGTGGGCAGGTATCTGAGGGGGGACAACTCAAGTCTATAAATGGCGAGCTTTACGCACCACTGCAGCACGTCAGCGCGGTTTTGGAGAGTGGTCCGGCCCACAGCGGAGGAGTTCGAATTGGCGACAGAATCCTTGAAGTGAATGGAGAAAATGTGGAAGGTGCAACTCACAAACATGTAGTTGACCTGATTAAGAAAGGAGGGGATAAATTAACACTAGTTGTAATATCTGTCAGTCAACTAGAAGCTGAAAAACTTGATAGCGACAGTTCATCTGGAGGAGAGTATTATGACTATTCTGACAAGCATGTTGTGCCAATATCTATACCAGAGACAAGACAAGTCACAAGTGATGGTGAAACATATGTGGTGTATAATATATATTATGAAGACAAGCATATTTGTTCAAGGAGATACAAAGAATTTTCAAATTTGCACAACAAGctaaaGAAAGAGTTTAGAGATTTCCAGTTTCCCAAGTTCCCTGGAAAATGGCCATTCCATTTGTCTGATCAGCAACTGGAGACTCGGAGAAAAGGCCTTGAGTCTTACCTTGAACAAGTGAATTCTGTGAGGGTAATAGGAGAGTCAGATATAATGGAGGAATTCCTGAAATCTTCAGAGAACCATGTCATGAAGAAAGATGAAGAGGATGGAAACATGCAAGTTGAATTAAGAGTATTTTTACCAGATGACTCCATCACAACTGTGGCTGTTCTCAAACATCAGAAAACTGATGAAGTATTTAAGgcTTTGGCGAACAAGCTCAATCTAGGCCAGGAAAATTTTATAAACTTTGCTCTCTTTGAGATTCTGGAAGATGCATTTGaacgGAAACTTGAGAAAAATGAGTTTCCACACAGTGTGTATATCAGAAGCTACTCTGCTCTGTCCACAACTCCCCTTGCTATCAGGAAATGGAATTTCACTCTAGCCAGGGAAGTTGAGATGAGCAGTGATGAATCTGCACTAAATCTACTTTACAGCCAGGCAGTTGGGGACTTAAGAAGACGGAAGCTCTTACCAGGCAAAAACTTACAAAAACTCAAGGATCTGCAGGCAGGgaataagaaaaaagaaTTCCTTGATATTGCAAGGACATTAGAGGGATATGGAACTGTTGTGTTTCCTCACTGTGCATGTGATGCAAGAAAGTCTGGCCATGTTATTGTGTCCATAAGTTTAAGCAGTTTTCGATTGCAAGCATGTTCTGATCAGGGGGATCGAGAGGATCAGGAACATACATTCAACTGGGAGGAGCTGACTAAGTGGGAAGCTGATCATGAGGCTATGGCATTCTGCTTTGAGTACAGTAGAGGAGGAAAGAAACCGAGATGGGTGAAAATTTATTCACAATATTTTGTGTTCATGAATGCATGTGTAGAAAGAGTCATGAAAGAGATTGAATGGAATGAAAAGGACGGTATTTCACCTTTGTATCCAGCTCAAGTAGAGGGAAACGGATCAGTTGAAGAATCGACTGATGACACAGATTCACAGGACACGACTGTTAAATCCACTACCACCCCTGTGAGCCACACAAAGTCATCGTCGAAGGGCAATCAGAAATTTGCAATGCCTAAAACAACGACCAAGAAACTGTATACTGAAATCGATGACGAGGACTTATGAAATGTGAACCAGTGAGCTTGATGCTTGTGTTACTCTCAAAAGAGTGTCTTCCTCGTCAGTTTTGTACTCTACGTATCGTTATCATTGTATggtttgtctttttctttttttttttttttcgtacaaCTGAACAGCCAGGGGAAGGCGTTTCTCGCAACTTGCGATAACTTTCCGGTCCCgatgagtgttttttttttcaaacccgTTTTATTAATCAAACTTCCCAATGTGTTGCATAAAAttgcaaatttttaaaaatttatctcaacttcgtccccagggtcttctcctcgttcaaaatggcggtcggagaagcccctggccaaggctgccaaagtggctccaaaaagTTCGTCagaatttcgtcacgcaaacactatgaaatgtcttcgttttgtttgaataataatttccgattgcagaaaacaaactggGCCGCCAGACGCTGCAAACGACCTGCCAAAAGCCATTTTATCATgcgtcacgtgacaaaatactccacgattcgtggagtatttcagc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF21271 all species →	SNX17-31_F2_FERM	Sortin nexin 17/31, FERM domain, F2 lobe	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF18116 all species →	SNX17_FERM_C	Sorting Nexin 17 FERM C-terminal domain	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037833 all species →	Domain	SNX27, PX domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR037831 all species →	Family	SNX17/27/31-like	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR048767 all species →	Domain	Sortin nexin 17/31, FERM domain, F2 lobe	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR037827 all species →	Domain	SNX27, atypical FERM-like domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR040842 all species →	Domain	Sorting nexin-17/31, FERM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12431 all species →	SORTING NEXIN 17 AND 27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:1990126 all species →	Biological Process	endocytic recycling	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17936	SNX27; sorting nexin-27	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.