Gene detail

Detailed information of FUN_014440-T1 in Acropora pulchra

Genomic Location: ptg000009l:216728...224265
NR annotation: XP_015754906.1, PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 41-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_014440-T1

ATGGGAAAACTGAGGGACGGGACGAGTTTATCTGCAGCAAGAAGTCAAGCTGCTCGTAGAGAAGTCATTCGACCTTTTGTTTGCTCAACTTTTCAAGATTTTCACAGAGAAAGGGACTTCTTACAGGAGTGCATATTTCCTCAATTGAACACACTATGCAATACGCGAGGAATTTCGTTCCTACCGGTAGATTTACGCTGGAACAAGAGTCAGTCTCACCATAACAGTGAACATGTTCTTCGTATGTGTTTGGATAGCATTGGAAGATGCGCACCATTCTTCATTTGTCTGTTGGGCAACAGATACGGTGTTCATCGAGCTGCCGAGAATGAGGTAAAAGATCCAGCTACTGAGGAATGGCTGAACAGGAACTTTGAAACTGCATCGGCGTGTGGATATGATTGGGTGCTTGAAGAAGAAAACAGGTTTAACAGTATCACAGAGTTAGAAATTGTGCAAGCATCTTTCCGTAGGAAGTATGACTTTGGCTACTTTTACTTCCGGAGCAACACAAAAATGGAAGCGAATCTTCAAGATCCTGTGGATGTATCTGTTAAAGAAAGTTTAGTGTCCCTGAACAAACCCGAAAGTCAATATGCCACAAGGAAGCTAAGAGAGCTGAAACAGCAGATTATTGATACAGAGTTACCAGTTCGTCATTTTGCCTCTCTTGAAGAACTTGGAGAGCAGTTAATGAAGGACTGGGTTGCAGTTATAGAGGTTCATTATCCATCAATAAATCCACTGATATTTCCTACTACTGACTCAGACGTGTGGCATGAATGGTCTGCCCAAGAGGCACTTGCTTCGAAGCATTGTAATTTATTTGTGAAGACTCCACGAATAAGGGAGATAATAGAAGTGTTGAACCTTCATGCTGAAGTGGAACAGGGAATCAAAAGAAAGTCCAATATGGTGGCTCCAACAGCTGCAATCAGCACTTTTATGACCAGTCTTCCTGACAGTGACAAGGAAATCCTGCCACCGGTGTTGGTGCTAGCTGGTGAAAGTGGTTGTGGAAAATCCACTTGTGTAAGTCATTGGCTCAAGCAGTTCACATCCAGCCATCCTCAAGTGGCCATCATTCCCCATTTTGTTGGTTGTGACTCTGGCAGCAGTGACATCAGCAATTTCATGCGTCGTTGCACCAATGAATTACGTCATCACTACCTTGATTCTGATATTTGTGATGTAATTGATATCCATGATGTGAGTGACTTTGCAAGGGTAACAGAGGCATTCAGAGCAGCCATATCTCTAGGCCCATGTGTTATAGTTTTGGATGGGACAAATCACTTAGGCCATGCCTTGGATCGTCCAGCACACACAGTAAAAGAGACAAAGTGGCTACCTTCTTTTGTCCCAGTGTCATGTAGAATAATTGTCACAACTACAAAAGCTGATATCACTTATTTGGAGCTCTCAAAGAGGAAAGATGCGTACTGTATTGATGTACCACGATTTTTTGATGTGAAAGGAAAGAAAGACCTTTTAAGAGAATATGTGGGTTCTAACTACAAGTTTCTGGATGCCGCTGTTGTCTCTGAGGTAACCTCCTCTAATCTTGCGCATTTACCGATGTACTACGTTGCGCTTGCTAGTGAGCTACGTATCTTGGGTGCTCACAAGAATTCTCAGAGATTATTAGACTCATATACCCATGCCCCAACATTGTTTGACTTGTGGAGTTTGATATTTCGCCGCTGGACTCATGAATATGGTTGGTTACGGGCTGCTGCCTCTCGCAGTCCAGTTCCCACCATGAAGGCTCAGGTATCACGTGATCGTATGAACAGTGGATGGATTGCTGATGTCTTAAGACTGATTGCCCTATCACGTGAGGGATTATCTGAAAATGAGGCTTTGAGTGCTCTTAAAGTCATGGGTTATGTGAACAAGTATGAAGTTACCAAAGCCCACTGGGAAATATTTCGACTTGCTGCGCAACACGCCCTGATGGAAATGCCTTCTGGGTTGTTGACCTTTTCTCACCAGTCAGCCCGAGCTGCGGTGGAAATTGCGTTGCTCGGTAATCTGACGTCTCCCTCTCAGGAAAGAGCCATTTCCCCCTTTCAAGAATCATGGGAACGACAGAAACAACAAGGACATGCAGTGCTAGCAAGTTTCTTTTCAAAAGAACCCTCGTGCAGGCGCACAGTCAATGAGTTACCATGGCAACTAAGAATTGGCGGGAATTTTGAACAGTTAAGTTCCACTATTTGCAAGCCCAGTATGTTTTTAAGGTTGGCGGGCGTCAGGGGTGAAGAGCGTGGAAAGATCGATTTTATGTTGTATTGGAGAATCTTGAAACAGAGGGGTTACAAGCCTGAAGAGATCTTGTATCAGATGTGCATCAAAGTTGAAGAGACGTTGTTTAATAAGACAAATGAGTCAGCTACTGGAGAATTGGATGTCATTTCTCAAAAAATAGCGGAATTATCAGCCGTCGAGGATGTTTGTCAAAAAGACGACAATGAACAGTTAAATCAGCTTGAAGTTGCGCTTATTCACTTCTCCGCTGGGAAATTTCTCATTCAAGATGGAAATGATATCATGGCGCAAAATCTATTTCTGAGTGCATATAAGATGGCTTACCCCGTAGTTTCATTAAGTGATATTTACTTGCTGTTTGACATCCAGGAGTCACTGGGCAATCTTTATCTAAAACTCTCAGAAACAAACAAGGCGGTGTTTTGGTTCAATGGTGCTTTAAAGGCCGCTAAAGAAATAGCAAGCAAGGTTGATCAAACGGCGATGATGGGGCGAATTCTGGATCAACTGGCAATGTGTCGACTTCCAAATGAGGTGGTTCTCCCAGTAGAAGTTGATGAGCAGTCACGTGCGTCCACGTGGACGGCGGGAAGAGTTAATACCAATATGACATCCGAAATTCAAGAATTTGAAGGAAACAACGAACGGCATGTCAGCAATACTTTGGATGAGGCTTTAAGACATTTGAAACTCGCCAATGATGTTCCGGGCCAGAGTAGCGTTTATTTTCACATGGGATTGTTGGCAGCAACGCAAAGGCGAGCAGGCGATGCAGTGTGCTTATTTCACAAATCTCTGAAGATGAGAAAGGAATGGTACGGCTTGTCCCATCCTCTGGTAGCGGAGATCCATGATGCATTGGCGTCGATGATGTGTTCTGACGATACAACTGAGTCTGTAGATTTCGCGAAAGTGGAGGAAATGTTTCGGCAGGTCCTACGTATGCGAGAGGAATTGTTAGGCTCGTCCCATTTGATGGTTGCAAGCACTTTGTTTAAGCTAGGTAAACTTCTTCAAGCCAAGGGCACGAAAGATGCAGCAGCAGAGGCCAAAGTACTTTTTCAGAGAGCGCTAGACATACGAACCTCTCATCAAGGTGTGTACCACAGAGACTCCAAGTTGATTAGGCGAACTCTTATGTTGTTAGAAACATCAGAGGTGGCTGCGAGACTTGGCGAAAAAGCAACAAGAAAGACGAGAGACCCATATGCTTTGAGCGGAAGGACAAGTCTCTTATCAACGCGGAAAACATCCCGCAAGAACCTTGCTATCAATCAAGCAACTGTGTCATAG

Transcript

FUN_014440-T1

AGGAGGACTGTTAACCTGCCCGTCACCGTGGTAACGGCGGCTTGTGTTGCTTGAGGACGATCAGCCAATGCAAAGTGGTGCATGTTTTTATCTTTCATATTTCAACGAGGACCCCACAGGCCCTCCATTAGTTGCCAATGGGAAAACTGAGGGACGGGACGAGTTTATCTGCAGCAAGAAGTCAAGCTGCTCGTAGAGAAGTCATTCGACCTTTTGTTTGCTCAACTTTTCAAGATTTTCACAGAGAAAGGGACTTCTTACAGGAGTGCATATTTCCTCAATTGAACACACTATGCAATACGCGAGGAATTTCGTTCCTACCGGTAGATTTACGCTGGAACAAGAGTCAGTCTCACCATAACAGTGAACATGTTCTTCGTATGTGTTTGGATAGCATTGGAAGATGCGCACCATTCTTCATTTGTCTGTTGGGCAACAGATACGGTGTTCATCGAGCTGCCGAGAATGAGGTAAAAGATCCAGCTACTGAGGAATGGCTGAACAGGAACTTTGAAACTGCATCGGCGTGTGGATATGATTGGGTGCTTGAAGAAGAAAACAGGTTTAACAGTATCACAGAGTTAGAAATTGTGCAAGCATCTTTCCGTAGGAAGTATGACTTTGGCTACTTTTACTTCCGGAGCAACACAAAAATGGAAGCGAATCTTCAAGATCCTGTGGATGTATCTGTTAAAGAAAGTTTAGTGTCCCTGAACAAACCCGAAAGTCAATATGCCACAAGGAAGCTAAGAGAGCTGAAACAGCAGATTATTGATACAGAGTTACCAGTTCGTCATTTTGCCTCTCTTGAAGAACTTGGAGAGCAGTTAATGAAGGACTGGGTTGCAGTTATAGAGGTTCATTATCCATCAATAAATCCACTGATATTTCCTACTACTGACTCAGACGTGTGGCATGAATGGTCTGCCCAAGAGGCACTTGCTTCGAAGCATTGTAATTTATTTGTGAAGACTCCACGAATAAGGGAGATAATAGAAGTGTTGAACCTTCATGCTGAAGTGGAACAGGGAATCAAAAGAAAGTCCAATATGGTGGCTCCAACAGCTGCAATCAGCACTTTTATGACCAGTCTTCCTGACAGTGACAAGGAAATCCTGCCACCGGTGTTGGTGCTAGCTGGTGAAAGTGGTTGTGGAAAATCCACTTGTGTAAGTCATTGGCTCAAGCAGTTCACATCCAGCCATCCTCAAGTGGCCATCATTCCCCATTTTGTTGGTTGTGACTCTGGCAGCAGTGACATCAGCAATTTCATGCGTCGTTGCACCAATGAATTACGTCATCACTACCTTGATTCTGATATTTGTGATGTAATTGATATCCATGATGTGAGTGACTTTGCAAGGGTAACAGAGGCATTCAGAGCAGCCATATCTCTAGGCCCATGTGTTATAGTTTTGGATGGGACAAATCACTTAGGCCATGCCTTGGATCGTCCAGCACACACAGTAAAAGAGACAAAGTGGCTACCTTCTTTTGTCCCAGTGTCATGTAGAATAATTGTCACAACTACAAAAGCTGATATCACTTATTTGGAGCTCTCAAAGAGGAAAGATGCGTACTGTATTGATGTACCACGATTTTTTGATGTGAAAGGAAAGAAAGACCTTTTAAGAGAATATGTGGGTTCTAACTACAAGTTTCTGGATGCCGCTGTTGTCTCTGAGGTAACCTCCTCTAATCTTGCGCATTTACCGATGTACTACGTTGCGCTTGCTAGTGAGCTACGTATCTTGGGTGCTCACAAGAATTCTCAGAGATTATTAGACTCATATACCCATGCCCCAACATTGTTTGACTTGTGGAGTTTGATATTTCGCCGCTGGACTCATGAATATGGTTGGTTACGGGCTGCTGCCTCTCGCAGTCCAGTTCCCACCATGAAGGCTCAGGTATCACGTGATCGTATGAACAGTGGATGGATTGCTGATGTCTTAAGACTGATTGCCCTATCACGTGAGGGATTATCTGAAAATGAGGCTTTGAGTGCTCTTAAAGTCATGGGTTATGTGAACAAGTATGAAGTTACCAAAGCCCACTGGGAAATATTTCGACTTGCTGCGCAACACGCCCTGATGGAAATGCCTTCTGGGTTGTTGACCTTTTCTCACCAGTCAGCCCGAGCTGCGGTGGAAATTGCGTTGCTCGGTAATCTGACGTCTCCCTCTCAGGAAAGAGCCATTTCCCCCTTTCAAGAATCATGGGAACGACAGAAACAACAAGGACATGCAGTGCTAGCAAGTTTCTTTTCAAAAGAACCCTCGTGCAGGCGCACAGTCAATGAGTTACCATGGCAACTAAGAATTGGCGGGAATTTTGAACAGTTAAGTTCCACTATTTGCAAGCCCAGTATGTTTTTAAGGTTGGCGGGCGTCAGGGGTGAAGAGCGTGGAAAGATCGATTTTATGTTGTATTGGAGAATCTTGAAACAGAGGGGTTACAAGCCTGAAGAGATCTTGTATCAGATGTGCATCAAAGTTGAAGAGACGTTGTTTAATAAGACAAATGAGTCAGCTACTGGAGAATTGGATGTCATTTCTCAAAAAATAGCGGAATTATCAGCCGTCGAGGATGTTTGTCAAAAAGACGACAATGAACAGTTAAATCAGCTTGAAGTTGCGCTTATTCACTTCTCCGCTGGGAAATTTCTCATTCAAGATGGAAATGATATCATGGCGCAAAATCTATTTCTGAGTGCATATAAGATGGCTTACCCCGTAGTTTCATTAAGTGATATTTACTTGCTGTTTGACATCCAGGAGTCACTGGGCAATCTTTATCTAAAACTCTCAGAAACAAACAAGGCGGTGTTTTGGTTCAATGGTGCTTTAAAGGCCGCTAAAGAAATAGCAAGCAAGGTTGATCAAACGGCGATGATGGGGCGAATTCTGGATCAACTGGCAATGTGTCGACTTCCAAATGAGGTGGTTCTCCCAGTAGAAGTTGATGAGCAGTCACGTGCGTCCACGTGGACGGCGGGAAGAGTTAATACCAATATGACATCCGAAATTCAAGAATTTGAAGGAAACAACGAACGGCATGTCAGCAATACTTTGGATGAGGCTTTAAGACATTTGAAACTCGCCAATGATGTTCCGGGCCAGAGTAGCGTTTATTTTCACATGGGATTGTTGGCAGCAACGCAAAGGCGAGCAGGCGATGCAGTGTGCTTATTTCACAAATCTCTGAAGATGAGAAAGGAATGGTACGGCTTGTCCCATCCTCTGGTAGCGGAGATCCATGATGCATTGGCGTCGATGATGTGTTCTGACGATACAACTGAGTCTGTAGATTTCGCGAAAGTGGAGGAAATGTTTCGGCAGGTCCTACGTATGCGAGAGGAATTGTTAGGCTCGTCCCATTTGATGGTTGCAAGCACTTTGTTTAAGCTAGGTAAACTTCTTCAAGCCAAGGGCACGAAAGATGCAGCAGCAGAGGCCAAAGTACTTTTTCAGAGAGCGCTAGACATACGAACCTCTCATCAAGGTGTGTACCACAGAGACTCCAAGTTGATTAGGCGAACTCTTATGTTGTTAGAAACATCAGAGGTGGCTGCGAGACTTGGCGAAAAAGCAACAAGAAAGACGAGAGACCCATATGCTTTGAGCGGAAGGACAAGTCTCTTATCAACGCGGAAAACATCCCGCAAGAACCTTGCTATCAATCAAGCAACTGTGTCATAGTATACTTCAGTTTGAAGAGATGATACGTCTTGAACACAATATCTTCTTTTTTGAGGTCATTGTACTTTTGAGCTTCCGAATCCACAGTGAGAGCTGATTCTAATCTTAAAATATGATAGGGTTATAGCTCATTTCAAACGGTTCCCAATGAATGATTTGTACGAGATGAGATTACTTCTACCTGCCATTACTTTTACAACTGCTCCGGACACTGTCCGAATTTCCTATGTAAACCGTATGCCAACAAACAAATACGGTATAAGAAACTGTTTTTTTCACATACCTTTAACAGAGTCAGGCTTCATCAGCACGAATTAACCAGTTATGAGTAACTCTATGAAGGAAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q692V3	Tetratricopeptide repeat protein 41 OS=Mus musculus OX=10090 GN=Ttc41 PE=1 SV=1
Q6P2S7	Putative tetratricopeptide repeat protein 41 OS=Homo sapiens OX=9606 GN=TTC41P PE=5 SV=3
Q6P3V7	Tetratricopeptide repeat protein 41 OS=Rattus norvegicus OX=10116 GN=Ttc41 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13271 all species →	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051191 all species →	Family	DDB1-CUL4-associated factor 12	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR025139 all species →	Domain	Domain of unknown function DUF4062	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19860 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24944	TTC41; tetratricopeptide repeat protein 41	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.