Gene detail

Detailed information of FUN_014537-T1 in Acropora pulchra

Genomic Location: ptg000009l:1032853...1041614
NR annotation: XP_029194200.2, F-box/LRR-repeat protein 2-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_014537-T1

ATGGTTTCTACATCTTCAGTATCGGACGAGAGAACCCCGTTAATGCGCTCTGCTTCCGCCATGAACAGCCAATCAAGCGGACAGTGGCAACAGTCTCCTGTTCAAATGCATTTGCCATCGCAAAGCTTTCGTTGTAGAATGATTTGCATTCTTTTAATTGTTATTCTAGAAAGAATAACATTTTACGGTCTTATAGCAAATTTGCTTCCTTTCCTTATAAACAGGATTGGGTTAGAGCAATCGGCCTCCATTGCAGTTGTGTTTACTTTCACTGGTTTAGCTTGGTTAATGTCAACCATTGGAGGGATCATCGCAGATTCTTACAGTGGTCGTTACAACGCTGTTTATGGCAGCCTTCTCATATATATCGTTGGAGTTGGAATGGTACTTGCTGCAGCTGCCTTTTCGGAATTTAAATTTGGAGAAAGTTTCTACCAGCCTTTAGCCTTTGTAGCCTTGATAATTATCTCAGTGGGTGAAGGGGCCTACAAAGCCAACGTTACTGCATTTGGAGGGGATCAGCTGCAAGCAGGAGATGATACAGAGTATAGGCGATTCTTTAACTGGTATTACTGGTGCATAAACATAGCTGTCTTCATAGCGTTCACTGCCATTGCTTATGTTGAGCAAGATATAAGCTATGGTTTTTCGAAGGGCTTTGGAATATTGTTCGGTTGCATCATCTTGGCCTGCATTACCCTCTGTGTGCAGAGATCAGTTTATGTCTGCCATCCTCCTACAGGCCACATTGTGAGGAAGGTGTACAACATCATAAAGGAAGCAAGGCATAGAAAAAGGGAACAATCTTCATGGGACAGGACAGGTCAATATTTCCCTGGATATGAGGAGCAAATGCCAATGAAAAGCTGGCTTGACTATGCTATGATGAAATATGGAGGAAGCTATTTAGACACTGATGTAGAAGAAGTTAAGACAATTGCCAGGATTATGCTTATTTTTGCAACCCTTGTCCCGTACTGGACCATCTATTTTCAGATGAACTCAACGTTTCTGCTTCAAGGACTGCATATGATTCTTCCGGGTGACCCAAATCCAAAATTTGTTGTAGTTCCTGCCTGGCTCTCCCTGGCGGATGTCTGTTTTGTCCTGATGTTGATTCCTATTATGGATAAAATTGTATATCCCTGGTTGGATAAGAAAGGATGGCGATTGAGTGTTTTCAAAAGGATTTCTATTGGCTTTTTATTTGCTATGGGATCAATGATTGTGGCTGGCATTGTTGAGATTGAAAGGGTAGAAAGTCAAAATTGTGTTAATCATACTATTAGTAACCAAAACTACAGTGCTTGTTTGTCAATCTACTATCAAATACCTCAATATGGTCTTATTGGAATCAGTGAAGTGTTCGCAAGTGTGGCAGCTTTGGAATTTGCATACAAAGAGGCCCCAAAGACAATGCAAAGTTTTGTGATGGGGTTGGTGGTCTATAAAATGTTTGGTAAACGCAACTTTGATCACATCCCAGATAGCGTTCTTCTTCATATCTTCAGTTTTTTGTACCGACATGAACTCTCCACTGTTGGTCTGGTGAACCGAAGATGGCAAAGGATTAGCAGTGATGGAACACTGTGGCGACATATTCAACTAACTGAGAATGATGATAAACGAATCAGAGATATCATCACAACAAAATGTCGCTCGCACTTGACTCGACTGAATTTAACTAAATGCAACCTGACACCGGAGCTTATGATCATTTTATCTGGAATATGTATTCATCTCAAAGAACTTTCTCTCCAAAAGTGCTACTTTCTTGGACGCAGGAGGCGATTTAAGTTGCACGTTTTTAAAAGACTAAGAACGTTGGATGCGCGCTTGTTACGCGGAAATGTGGCTTTTGTTGTTCCCTTGCTTCACTGTTCTCCGAATCTTGAAAATCTTGCCCTGGACGAAACTATTGGAACTAGTTGGAGCGGAAAGATTCTACAAAAGATGAACAAATTGCGTCTTCTAGATTTAACTCGCTGCGTCCAAGTCAACGACGGGGACCTGGAAATCATGGCTCAGAACTGTCGCAAATTGGAGTCGCTTCTTCTCGACAAGTGCTTTAAGATCGGAGGATGTAAATTACCAATTCTTCTGCGTGAATGCAAAATGTTAAAGACGCTCTCTTTGGCATTTACAAGAGTCTCGGACGAGTGGTTGATTCAGTGTGATTGGGCGAATTCATCTTTGACAGAAGTTGACTTCTCTTGTTGCTATTTCCTTTCAACGGTTGGTTTGGGCGTTCTCTTTGCAAATCTTGTTGACTGCAAATACATCAACTTAAGTAACTGTACTGAGAGTTCTGCGATCTCTCAAAGAATTTTAACAGACGTGACCCGTTTTCAATCCCTCGAAGTTCTCAACCTAGATGACGGTTTTGAAACTTCCCCCGAGAACGAGAGGCTGATTTGCAAAGTCACGCAAAATTGTCCCAAACTGACATGTTTTCTAGTAGGCATAACTCTGCAAACTGCTTCCTGTTTGGAGAACTGCTTGCGATCTTTACCACAACTGAAACGATTTGGTATATCTCGAGTTGATGAGTTTCCGTACAACTGGCGACCTGGTGCAGCTGCAAATCGCCTGGGTGGTTTTAGTTTGGAAATGATTCTTAATTACCTAGCATCTTACAATCACAAGTTGGAGGCATTGCAACTATCTGGTTACCGAGATCATGAATGCAAATCAGTCACCGATGGGTTTGTTCATTTGCTGAGAAACTGTAAAAATCTTTCGCGAATTTGCTCGTTTGGCGGAAATGCTAACATTCTCATTATGGCTGCCGAGGCTCAGGTGCAGACCAAACGCCATGAAATACGCCTTATTAAACCAACCATGCTATTTCCAACACCAAGGACAATCACCCCTCCTCCAAGTTACTGTTTTGATAGGATACTTTACGGGAAGGAAACTAATACAGTTAATGACCCATGGAAGGGTCCATTCGTGTACGAAGTGCAAAGAAATAGAAGATTCTGGATCGAAAATGCGTATGAATAA

Transcript

FUN_014537-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68F72	Solute carrier family 15 member 4 OS=Xenopus laevis OX=8355 GN=slc15a4 PE=2 SV=1
Q8N697	Solute carrier family 15 member 4 OS=Homo sapiens OX=9606 GN=SLC15A4 PE=1 SV=1
A6QQL0	Solute carrier family 15 member 4 OS=Bos taurus OX=9913 GN=SLC15A4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011548 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF00854 all species →	PTR2	POT family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR000109 all species →	Family	Proton-dependent oligopeptide transporter family	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11654 all species →	OLIGOPEPTIDE TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05313	GRIN; glutamate receptor, ionotropic, invertebrate	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.