Gene detail

Detailed information of FUN_014552-T3 in Acropora pulchra

Genomic Location: ptg000009l:1120418...1129435
NR annotation: XP_029194281.2, probable RNA-binding protein 19 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_014552-T3

ACTTGAAAGAACACGTGCTCAAGTGTTGGAAAATTAACAACGTTGATGATGTCTAGGTTGATCGTCAAGAACCTTCCGAAGAATATAAAAGAAGAGACTGTACGATCCATTTTTGAAGAGGAAGGAGAACTAACGGACTTAAAATTATGCTATACAGATACTGGTAAATTCAGAAGATTTGCTTTCATCGGTTATAAAACAGAAGATCAAGCGAAAGCTGCTCTTCTACATTTTGACAAATCGTTTGTGGACACTTCAAAGATAACTTTAGACATTGCCAGGAACCTTGGTGATGAGACATTGCCAAGACCCTGGAGCAAATATTCTGAAGGAAGTTCAGCTAATAAAAGATTGAAGGAAAAACTAGAAAAGGTTGAGGCCCATGGCCAGAAAAGGAAGAAACGAGAGGTGGAATCAGAAGGAAAAGAAAGTATTAATAAAGAGAAATCAAGTATCATTAAAGAGAGGAAGAAAAAGAAAAAGCTTGAAGTATTAGATGAGCTTGCAGATGATTCTGAATTTAAGAAGTTTTTGGATGTACATAATTTGGGAACCTCTACAAAAACAAGTAGGACAGAAAATGCAAATAGTGATGATAAAACGAATCAGGAACAAGTGGAATACGATGATTCAAATGAAAGTGGAAGTGAAGGTGATGTTTATGATGCAGTGGGTTCATCTCCAGGAAATGTAGGTGAAGGAATTCAAGGAATGAAAAATAGCAGTGAAAAAAGTGATGAAAATATAGCTGCAAGGATAGATACTTTGTCAGATATGGATTACTTACGATCGAAAGTTGTTTCTGCTTCACAAGAAACCTATCTAAACAAGAAAAGTAAAACCAATTCAAAGATTGGAAAAGATAACTCAGAGAATAACAAAAGGAAGGACAAGAGTGATGATGAGGATGGCGATGATGACGATAGCGATGATGATAATGATGATGATGATGAGAATGTCACTGATAAAAATGAGAAGGGTGACAAAGCTGACATTGGAAAAAACTTGAGTAACGTGAAATTGAAATCACCTGCTGCATTTGGAACAGTTAAAATGAAGGGATTGCCTTTCAAATGCTACGAAAATGATATTAAAGATTTCTTTGCGCCTTTAAAAACTCTCAGTGTAAGAATTATTAAGAACAAAAAAAATAGACCCACAGGTTGTGCATTTGTTGATTTTGAAACTGAAAGTGATATAAAGGAAGCTCTTAAAAGAGACAAGGATTGTATTGAAGGAAGACAGATTGAGCTTTTCAGGGACATACAAGAGAAGAAACCAAAGGAAATCAAAAAGGAGAAACCTTGGATGAAAAAGCTTGTTGGCCAAGAAGGTACTGAGGAATTTGAGAGCATTGCTGAGTCTGGAAGACTTTTTCTTCGCAACCTGTCTTATGCCTGCTCAGAAGAAGATTTGCAAACGTTATTTGAAAAGTTTGGTCCTTTATCAGAGACATATCTTCCACTTGACAAGACAAGTAACAAACCCACTGGAATTGGCTTTGTGACATTTATGATGCCAGAACATGCTGTGAAGGCTCACAATGAACTGGATGGCAAAATATTTCAAGGAAGACTTCTACACATCCTGCCATCCAAAGTAAAGGAAACTAAGAAAGAGGTTACAGGTTTGTTTTGGTTTAATTATTTTCGATTTTATTAGCTTGACGGCAAGAGTTCGTTTTTGTGGTGTGGACGACCATATTGAAATACAACCCAAATGTTTTAGTTAGTATAATGATAATAATTAATTATTATTAGGTGTATTTGTGGGAAAAAATGATTGATTATTATTGTATCACTACCTGTGTACCGACAAAAACAAAGGCAGGGCTCGAAATAAGGGCCGGTCAACGGACTATGTCCGGACTGATTGTGGATTTGACCGGTCAAACTTTCGTCTTGCCGGTCATGTTAACCGGTCAAAATTCAATCGTATTGAAAATGAAATAAATTTAAGGTTCCTGCTAATCAGTTGTTTCAGTTGTTATTTATCGAGTCCCTGTGTATTGCAGGACTTTGATATGAAATCCTGGTGACATGCAACTGGAGCCGTTGTTTACAATTCGCGCATTGAAACATCGGAATTCGCCCACTTCCAGTCACAAAATTACCAAATATTTCCTACATTTTGAGTTTATGGGCCCCTAAAAGGGTAATTCATCATAATATTCATTTGACCGGACAGAAATGAATTTGGCCAGTCATCATGACTGGAGACTATCCGAAAATTATTTCGAGCCGTGAAAGGATGAAACTTTTGAGGGACTTACAGTATTTAAACTAAGTTACCATGTTGAAAGGGATATTCCAAATGAACATTGAGAATTTTCCTTCAAAAAATTGTGATGCTGATGTTCATTTTTACCTAATCAAGATGAAGCAACCTCCTTCAAGTCAAAGCGAGATGCAAAGAAGAAAAGCTTGAGTAGTCATGACCATAACTGGAATACACTTTTCCTTGGAGTGAATGCTGTTGCCGATGTCATGGCCGAGAAGTATAACACAACCAAAAGTGGCATATTGGATGATGCATCATCAAGCAGTTTGGCTGTAAGGATGGCTCTTGGTGAAACACAAATTGTCACTGAAACAAGGAAGTTTCTTGTTTCTCAAGGAGTCAAGCTCGATGTCTTTGGGCAGGTATGTCCTGGTCTAAATAGAACTTTCAATTACCTGAGACTGCTTCCAGGATCAAGAAGACTTCCAAACTAGAGCCAATAGCAGTGTCTCTCTTAGTATGTTCCTAAACACTAAATTCAATTTAGGCATAATGTGAATTTGTTCCACTATGCTGGCTTGTGGATGTTACTTGAAAGATTTATGAATTTACACTTTGTACACTCTCTAAAAATTGGACTGAAAAGAAAATTCTTCATATCAACTAAAGAACAATAAAATATTTTAAATAATTATTCATTTTTAGCCGTCAGCCAAGAGGAGTAACACTGTCATAGTTGTAAAGAATCTTCCATTTGACACAACAAGTGATGAGTTGAGGACCATTTTTGAACCCTTTGGTACTGTGGCCAGGCTTGTGTTGCCTCCATCAGGAATTACTGGATTGGTGGAATTCTTTGAACAAAGTCAAGCAAAGAAAGCCTTCCAAAAACTGGCATACAGCAAGGTAAGGGGAAAGATGAATAATTAAACATTGATAATGACATGGGCAAAGCTGGGAAAAATATCTCATGTCTCTCACAGAAGCAGTTGCATTCTTAAAGAAAACTTACCTAAGCTAGCCTAATACTTCTTTCCATGCTTTAAGAAATTTCTTTTAAAGAACTGAGAAAGAAGAGTCCATTGAAACTTCTATCTTGGCAGTGCGGCGGAGCAAAATAAAAAGTGGTGGAGTTAAAAATAAAATGTGACATTCCATTTTTATCAGCCTCCCCACCCCTGACCAATTTCCTGTTCATTCACTGCTGTTTCATCAGCAATATGTTGCCAGCTTCACTTTGATGCAGCTGTAGAAAATGATTCAATAATATTATTGTTGTCTTTACCAATTTGACAAGGCAACCCACGATGATAACGGGTGAGGCTGGCCCCACAACATTGGTTTTAGATAATAGCATAACCTTGCTCTTTTTTGGGGTGTGGTGTGAGCCTGTTATTAAGACACCAGGCTCCAGTTGTTCAAACGCTGGATAGCGCTATCCACTGGATAAATCACTATCCACTGGATAACTCAATTGGTTTTGCTAGTGTTTATCTGCTGGATAGTGATTTATCCGGTGGACAGCGCTATCCATCGTTTCAACAACTGCGGCCAGGAGTAAAGCTCCTTCAGTGCTTTGTTTAGTTGGTGTATTGCTTGGTCCCCATTTTCCGTCAGCCATGCGATATATCGTTGTGTCATCCGCAAACAGATAAGTTTCACCTGAAGGGACTGAAGATGGTAAGTTGCTGGTGTACAGTGCGAATAGCGTTGGCTTTAGGACGGAGCCCTGGGCCCAGTTCCTCAAAGCCCGATTAAGCTAATCCTAGATTAGTGAAAAATTTAAATCGCTATTTATTTACCGTTAAAGAAGGATTTTTCATAAGATTAAGGGTTAAGGAAAAGTAGCTTATAATTTATAACCTTTTTGGGCCACAGTTTTGTTGAAACCCTTCTTTAGCGGTAAGGTAACAGAAATGAAAATTTTCGGCTAATCCAGGGTTAGCTTAATCGGGCTTTGAGGAGCTGGGCCCTGAGGGATTCAGGCTGAAACTGATTGCATTTTAGATTTAACGTCATTCACGACAGTGTACTGAAGTCGATTACTAAGGTAGCGTTTCAGCCAGTTATGCAATGGCCCTAAAATTCCAAAGTTTCCCTGCAACTTAGTCAACAGCTGTTTGTGATGGACATAGTCAAAAGCCTTTTTAAAATCAATAAAAGCTACTGCAACGGCATTTCCCTTGTCCACCTCTTTTCAATTCTCGCTCTGATCACAAGACATTGTTTTGAGAAGAATGAGCATAAAAATTTAGAACATTTATTTATACTTTCTCTCTATTCATACAGTTCAAACATACACCGCTATACCTGGAGTGGGCTCCACTTGAAGTATTTTCTAGTAAACCTGAAAAGAAAAGTTCTGAAGAAACAGACAGAGACAAAAACGTTAAGAAAGACACGGTCAGTCATTTTTTCTTGATCTTTGTATTCCTGCTCCTGAAAAGACTTCTTGAAATCCTTTGTGGCGGTTGGACACATCGTTTTAAATAAGAGTCTGTGCTTTGTATCGTGGTACAGTGAGGCTGTAATTAGCAGTTTCTTTGTTTTGTGACAGAATGAAGAACATGCAGTTGCCGATAAGGAAGAGGATGATGACGGCGATTCTGAGAATGATGAGGGAACGACTTTGTTTGTTAAGAACTTGAACTTTGATACAAACGAAGAAACGTTAAAAGAGGTGATTTGACCAACCATACTTTTCAAGCAATCCTTGCAAAACTTCTGCTCCTTAAAAGATGACCTAATAATAATTATTGTTGTCCTGGACTTTTTTGTACTCTGTAGGTGTTTTCCAAAATCGGTCCTCTTCGAACTGTCGTCATAGCCAAAAAGAAGGACTTCAAAAATCTTGGCGAGTAGAATCAAGGCTGTAATGCACTTCTTTCTCATTTAGCTAACAACATACAAACCCTTGTCTTGTCATTGGAGGGGTCGAACTTATGCACGCTTTATTTTATTAAATAATTGCAGGAAATTTACTATCAATGGGTTACGGTTTTGTGGAGTACAAGAAAAGATCCGACGCTCTTAATGCTCTCAAGAAGCTTCAGGTGATGTTGTGAAGTTTCTTTCGTCCCTCACCACAGGGAGTAAATCTGCCTCTTTCTGAAATTTGAAACTTAGAAAGAAGACGAAGAAGCCATGCGTCAAAACGGTTATCTTGTCGCCTGCGAGAGCAGGCTCTCTGGGGGACAAGGTCGGCGTACCCCGACCCAGTTCCCCAGAGAACCTGTTTGCAGGGTTATTATGTTGTGTTAAGTTTGTGACAAAAGGCAGTGCAGTTGACAGACAGAGTAAAAAGATTGGTGTGTTGACCGAAATCGTAACTAGAACTTTCAGGCCATGCCGGAAATTACTGAGTTTATCACAAGTAGTTTAGCACCAGCCAAAGACGACCGTCTTTGTTCGTTTTTCGTTCTGTTTTGTGTTGTTCTTGTTTTTTTTTGTTTTGGTTTTGTTTGTTGTTGTTGTTGTTGTTTTTTTTAGGTTTTTAGCTATTTCAGGGATTGGGGTTGTGACATTGCGATGAAAGGTCATGTTTCTCTTTATTTAGAACTCGTCAGTTGAAGGTCACAATCTTGAACTCAAAATGTCACACAGAACAAAAAAGTAAGTCAGGTGGTCAAAGGACTCTGTGATTTTTTTCTTGTAACTGAATAGGAGAAGGTGAATGGTTGTTTTCCTGTTATTTAAGAACGGTGCCTACTAATTAAAAATATTTTTTCCCCGGTGTGTTATTATGCAGGAGATGTAGATCTTAACAAGTCCTATTGAAATCCAAAAAGAAAATTGGGGGTAACCACGCATTTTTTAAAGATAATTCATGAATAATATCTGTAAAAAGCTTTAAAATACAAAGCAATGTATGGCGTTCTTTCTCAAATTGAAGCTTAATTATCTCTCAAAAATGCATGGTTACCCCCAATTTTCTTTTTGGATACCAAGAGTACTTACTAAGATCTACTTTCTCCGGATAGCTTTAAACCGCGCAAAAATGTCCCTGTATTAGTAAGCATTGGCGATAGGAAATCCGAGTATCTGGAGATGCGCAGAACGTATGCGCAATAACAATAGTAGGCACCGTCCTTAAAGCATGCAATATCACCGATCTGGTGACGTAATTTGGAGGACTGGGAAGAAAAATTTTAACGCCGTATCCCACAACCGCGCGCGGCCTTAGGTGTTGTTTCCAAACTCCCTGCAGCATTTCCATCGCCAAAACTCAACAGATCATTCCGTGTCTACCACATTTCCTGTTACTGAATGAACATTCAAGTAGACCCGACGAGCTCTAACCTCGCCTCTGCCATGTTGAATTCGAAAATAAGGCCGCGCGCGGTTTTGGGATACGGCGTTAAAACTTTTCATCCCAGTCCTCCGAATTACGTAACCAGATCACCTGGCATTTACTTCAAATGCATCGTCGATCTACAAAATAAACGAGATATGGACTGCCGCAAAATTTCTTTCCTGCAAGAATTTCCCAAGACATTTCGCTAGAGGATGATTTCTCTTTGAGTTGAGGCCATGGGGCCAACATGTGGATTAAGCAACCGCTTCCCGGCTCAGAATTCTCAATTTCGTGAACCAAACCCCAACCTTTTTTCGCATATTCCTCGCGGAAACTTTTTAAGTTCATGGTGAAGATTGATATAGTTTTCTTTTTTCATTATAAGTGACAAGGTTTCAAAACGCAAGTCGGCTTCATTGACGAAACAGAACACTTCCAAAATCTTGGTACGCAATGTGCCTTTTGAGGCATCAAAAAAGGAAATTAAAGAGCTTTTTGGGTAAGTATGGAGAATTTTTGACGCAAAAACTTTGTTATGTGTTAATGTTTGTGAAAGGTACATTGTCTCGCATTGCTGGTGTTGTTTTTGTGCGCCCATGAAGATCTCTCAGACAACCCTAAGCTAATACTTCGTTGGAATTAAGTTTAATGAACTTGACTCGTTGGTTATTTTAGCACCTTTGGGGAGATCAAAACGCTACGATTGCCCCAGAAGATGTCAGGAACTGGAACCCATAGAGGATTCGCGTTTGTTGACTTTCTTACCAAACAGGACGCTAAAGTAAGGAGCGTTAAAGAAAAAAGCTAAACTGAGTGTTGTTTGAATGCTTTTTTGTACTTTTGGTGGGGCATGCAGCAGTTTGCGAGTCATCTTTGGATTTATCTTTTTTGCAGCGTGCATTCGAGTCTTTGTGTAGCAGTACTCATTTATACGGGAGAAGACTGGTGCTAGAGTGGGCTGAAGATGAAGATAGCGTGGATGCTCTGAGAAAGAGAACCGCTGAACATTTTCATGGCAGTATCCTTTTTTGAGGAAGTCGCAATCATTACTCTTTCAATCGATAGGAAAAAGTTTGAATATTTACAAAAAATATTATATTCTGCAGTATGATGTTGAAGGCCTTAACTTTAATTTAGCCTCGAATAGTGCGAAAAAGAAGAAAGATTTGCTTGATGATCTGTTTGGCAAAGAAATACAAGAGTGATCTGAGTACAAAGACCAGAAGTCCATCAAGAAGGAGACGTTTATACGTCAAAAAGGAAAACAAAACGACAACAACAACAGCAAAACAGTTATTGCATGGCAAGCTTTTTCACAGCCTGGGCAGCGCATGTTAAGAATAAATGAAAATGACTATAAGACATTTGATTTTGGTGAATTCTGTACAAAGTGGTATTGGTTATGACATATGTTGCAGCTTTCTCATTCAAAAGCCAGTATAGCTGATTTTAAAAGTTAGCACTATAAGCGAACATTTTTCCTTTTGAAAAACAGGGAGGGATGTTATTCCCACTGAAGAACAGAAGTATTTTCTTATATTTGACAGAGTGTTCAATTTAGGCAGTCTTTGAAAGCAATTGAAATAGATAGATTGTGCATCTGCAATCCGTTGAGTATGATTTCTAAGTCAGAATTATAAACGTGCGAGGTTATGATATGGGTTTTAAACATCAACAATGTTATCTATTTGTTTGTCTCCCTCTTTGGTGAGTCAGTGATGTGTCTCCAAGAAATAAACTTCACTGACAAAAATGAAAACAAATTTAAACAAAAGAGAGTTTCAAAATAACCCCTCTTACTTAGCCGTGCATGTGGCTCTGTTAGCAACACCTTGTTTTACTTACATCAAGTACAGTTATTGTGCTGCGCTTGTTAGGAGCAATGAATACTGCCCCCCCCCCCCCCTCTAATGAAGTAAGCAGTAATAATCTCTCAAGCGATTATGATCAGTCAGTGAAAGTTTTCATGCTGAATAAAATTGGCCTCAATTTTCAAGGTGCTACTCGGAAAAAATGTAGTAAATAGGATTAGGCTTTGGCACGGTATTATTATAACTATTTTTTACCCCTGTAACATGATCATATCGGCCAAAAACTAAACACTGTATGATATAAGGAAAGACTTTTACTTTTAAATGAAACTTTTCACTAAAAGTACCGAATTTAACAAGTCTTTCTCTTGGATTTGAATGTTTAAAGAATGAAAATGTAACTTCATTTCGTTGGATGAAATTGGCAGCTCTTTTCCGAAGCTTCCGTATGTATCAGCACACGCGTATTTTAGAATGTAACTGATCAGTAACAGACAAAACTTGGTAACGGTTCATGATTTGTATTACAAATTTTAAAACATGTATGATATGAACAAAATTAAAGTTGAGTCTTAAACATAATGAAACTGACCGCACGTTCGCCGTAGCAGTTTC

Protein

Uniprot

Uniprot term	Description
Q9Y4C8	Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3
Q8R3C6	Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1
Q54PB2	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050441	Family	RNA-binding motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan