Gene detail

Detailed information of FUN_014609-T1 in Acropora pulchra

Genomic Location: ptg000009l:1490430...1500626
NR annotation: XP_029194346.2, uncharacterized protein LOC114960214 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_014609-T1

CATATTTGAATGTGCGGCGATGTTTTCTGTGTTGGCAGAAAAGTGTTCGCATTCTGAAAATTTCGCGACTAATTATTGGTTAAAATTGATTACAGATTAGGATTGAGAACATAGTGGATAATCAACAACCTAGCAACGCTTGGTCGTAAAATGATTTTGAGGCGTGCGCTCCAGACTTTCGCTGCAACCGATCTCCTTTGGAGTACGGTTTTAGGAAAAAAACCTTCACTCGAGTCTCCGCGGATGTTGACAGCGCGCTTTGCCTCTGTATCGGTGTGCAGATGTGGATGCGGGGGTGTTACCTTCGGGAATTGTGGCTCTCAGAAATACCAGAGACCTGTTCCTGAAGTTGTTTTAGCAACTCAAATGTCTTACAAGTGGTATTCTACTAAAAGCAATGATCGCTTGGAACTCCCTGGCAAGCAGTCTGCTGTTTTAGAAAGTCCAGGGTTCAGAAAGGATGCCATCAGATTTTGTAATCAAGTGGGTGTAAATTTCACTGACAAGAAACATCTTTTAGCTCCATTTGTCCATGAGTCATACCTCTTAGCAAATAATGGCAAACTATCTGGATCTTTTGAAAGTAATGAAAAATTAGCATTTCTTGGTGCTCAAGAAATACGAAAATGCATTACTGAGCATCTCTACCATAATTTCCCGGAATTGACAGCAAGAGATATTTGGGACATTCAGACAGGTTTGTTGGAAGATCATGTACTATCGAAAGCCCGTAGCTGGAATTTAAAGCAAATAGTTCTTTATTCGAGGCAGCCTCTGGATCTCATGTTGCGCCAAGCTGTACTTGCTCTTGTCGGAGCAGTTTATACTTTTGAGAGCCCAGAGAAAGCTGATGCATTTGTAAAATCACACCTGATACCTGAATTGACAACGTCAGAGATTAAAGAGCTCAAGAAGTTACAGCATCCAAAATTTATCTTGCAGTCAATAACAGATAAACTAGGACACTTATTTTTGCAGACAAGACTTGATTATGTGAAAAAGAGCAAATCAAACCTTCATATGGATAACCCATTTGTCTATTCTGTGAGTGTTTTATGTGGAGAAGAAAGAAAAGTCTTAGCTCAAGAGGTTTCTCACAGTTTAACCTTGGCAGAAAAAAAGGCTTGTCAGAAGGCCCTTGTCACTTGTTATGAAGATGAATTCCACAACTTTCATCTGAAAATTGATGATGATAACTTTGCACTGGAGACAAATATTGATCTTGGTTTGATAGCATCTGAACAGAGAATAATAGAGCTGGACAAGGGCAGTGAAAGTTTTGGTTTTCACATCAAGGGAGGAGAGAAAAAGAAAAAGGCAACTGAACAATGGCTGGTTTTTCATTACACCACACCAATCTTCATTTCTTACATTGTACCAGGGGGGGTTGCAGACAGACATGGAGGACTGTCTGTTGGTGACAGGATTCTTGCTGTGAATGATCAAAGTTTGGAAGGACTAAATCATGAGAGATCAGTAAGGCTCTTGAAATCCGTTTCTGGTTGTGTCACCTTAACAGTTTCACATTGTAGAGAAGCCTTGGTTACTGATCAAGTGGAGATGAAGTACAAAGAAATGCGGCGTAAGAAACGCATGGCAGAACTAGCATCTGATATTTGGTCAGACTGGCATCAAGCTCAGGCAAACCGCAATCCTTCCCAATACCAGGATATTCTCAAATATAATGATATTAACAAGGCTAACAAATCACCATTCTAGCAAATTTTTTTCACAATAATGAAATAATTATTATCAATCATGTTGAGTTTTAAACATGATTGTGTGGATGTCTTTTGAAAGATTTTTGTATGAAAGAGGAGAGTTTGCTTTATCATCTTGGGCAACTCATCTTCACTCATAGCTTGGGGAGTGTGCTCCAAATATATTTTCACCGTAAACCAAAAGGTTATGAAGCAACAAGACTAGGTTCAATCTACCAACTATGAACTCTTCTTCCCAGAAACACAACAAATTCTCAGCTTTAAAACCCATAACAACCTTACATGAGAACTACAATGACACCCTTGCAACTCAACCAACGCTGAAAAACTGTAACTTCCAAACCTTTCAAATATTTTAATAATTATCATTATTGAAAGATTAAAAGTGTTAGACAAGGGGACAAGATCTTGTATGCAAGCTTCAAATTTACCCAAACATTGCCCATACCAAAAGACAACAAAAATTTGTTTTTACACAGCTTATCAAGAGAGTTTTTTGGGGTGTTAAATGTTAGTGAGAAATTAAATTTCCCGTGGAAAGGCCCCCAATTCCAATATTAAGCAAGATAATAATCTCCACCAGAAAAGAGAACTGTGTATTAAAAGTAAGAGTTCCATCTAACATGCACCCCACCCCAAAAGAAAACCAAACAGTATTATCAATGCCTAATTTATTAGAGATGCCACTAGGAGAATTTGGCATAACCTAAATATTTTTTCAGTAATTATTGAAGCTTCAGCAAAATGTTTTCTTTCCGTTCAAGTTACTTGGTTTTGTGATAAAAATAAAATAATGACATGAAATGGGAGTAGAACTCTAGCCTAAAGGTCACTTTTGTCCTATTATGACCTTCTTTATTCAGCAAGAGGCTATGAGCTAAAACAACCAGCCTTAAAAATACCGGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P5F3	Protein lin-7 homolog C OS=Bos taurus OX=9913 GN=LIN7C PE=2 SV=1
Q5F425	Protein lin-7 homolog C OS=Gallus gallus OX=9031 GN=LIN7C PE=1 SV=1
Q9NUP9	Protein lin-7 homolog C OS=Homo sapiens OX=9606 GN=LIN7C PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007379 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14622 all species →	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR051109 all species →	Family	Membrane-associated multiprotein complex regulator	Interproscan
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14063 all species →	PROTEIN LIN-7 HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0007269 all species →	Biological Process	neurotransmitter secretion	Interproscan
GO:0016323 all species →	Cellular Component	basolateral plasma membrane	Interproscan
GO:0045199 all species →	Biological Process	maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:1903361 all species →	Biological Process	protein localization to basolateral plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_014609-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.