Gene detail

Detailed information of FUN_014661-T1 in Colpophyllia natans

Genomic Location: contig_22:4182640...4186783
NR annotation: KAJ7327793.1, Nesprin-1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_014661-T1

ATGGCGTCAAAATCTCTAAACTCGATTTCTTCAAGCACGCGGAGCCCTTCTCCAGAGAAGTCTCTGGGACTGGCGAAGCCTTCGCTTTCGGCTTCGACAGAACAGTTAATGGCGTCTTTATCAGAGGAACAAGTTCTGGTTCAAAAGAGAACGTTTGGAAGATGGGTAAACCATTTTCTTCAGAAACACAAGCCTCCAATGCATGTTGATGACTTGATTGAGGGTCTTCAAGATGGCACAAAGCTACTGGCACTACTAGAAGTGTTGTCAGGAGAACGCTTGGTAAGGCAAACTTCATGTGATGATTTATATCTCATTGTTAAGAATCgaataattatataaattgtaataatttgatgaaattaatatttaacTCGTTGCCTCGGAGATTACCGCTTAAGTGTATCGCGGGCGCATTTTCACACGTGAGCAATCGGAAGACATGTTGGATTGTAAGAGTTTTGTGAGACATCGTGGTTAGTTATGGCGACATTAAATGGTGAAAATCTACGTTTTGTGTGTTTGGAACCTTCGAATCCTTGACAGTTCTACCGTTTGAGAACACTCATTACTGACAGTTTAATTTGTCAAAGTCCTGTTAGCTTGACTGCCTAGACTTTGATAGAATTCAAATAAAGCCTTGAAAAGCCAGACTTTCTGCTTGTGATATTCAATTAACAATATGAACTTTTAAAATTAGGTAATCAGCGATTAGTGCTTCTACatgttgctgttgttcatcatggtaatagtgataataataaagtattatgatcgtttgtctcacgatgtagtcactttggatgtattttgtgttgttttgactgcatactgctagtcttcatcaggcgatgatgttGACTGGTTACGCAAaaacttataaagcactatgctctgctgtgattggctgtttttcaacagctgtgattggtgcatttggATCCTCACTGTTTCGGTGAGTGGTTCTCTCAACAGTCCACTTTTTCGCAGCTCCCCTGTTGCTGTGTTTATTGATCatgggcatccatgcttctggAATTGCAATTCCACTATCCATGTTGATGTTGtgagggtgaagtcttatgtctTATACAATGGAAGAAATTACCAACATGAAATCTCCAtatctacatgtaaattaaattatttattagttGAATTCCTACCTTAACATCAAGGGCCAGGTGGTTGCAAAGCCAGTTACGGTAATGCTAACCCAGGATCTACAGCTCTTCAACACTTTTCTTAGATGTGTCCCAGACAGTGATTGTGATAGGAGTAGTCCAGCATCTCTCTCAGATGGAGGTTACATTAGCAACATAATGAAATAACAGCTTAACAGCATAAcaccataataattattaattctGGTAACGTAAACATTGAGACAAAAACATAAAGCtctgttttatttctttactttgTTACATTCATACTGTTATGTTGCTATTAAGCCAGGATTTTCACACTGCAAGTATATTTTATTAAGtagttttaaatatatttttcatgtAGGCAGTGCCTTCAAATCTAATAGTTGTAGAAAAGGTGatatataaaattattatagcaattattaataattataattatacctgtaattataattattattgttgttgttgtcattgtcaTGATCATTATCGTGTTACTAGTGTAAACTAGGCCTACCGGTAAGTGGAATTTTTGGGTGTGAGCAATTAGTTATTATACAGCAATACAAAACTTCAATGAGTATGTATTGTTTTAAGATGTTTTTGTAGGTAACAAACACATAGTTGCCTTTTATGTATTGCAAACAATTTTCTGAACAATAAAATCGCTAGAATACTTGCATAGAGTATACAACTGGAACAAGGACCAAGAAGTTTAATGCCTTTACGCTGCAATTATGATTATAATAAAAGATTGCTAAACAATCTACACTGTATGCTATGACTTTGTgtgcatttttattttgaggACAAAAGGGTCTTTATTAGAGTTTTTTAACTTTACAAATCAACTTGCAAGTTTAAATTCGAGAACTATGATGATGTCATCCTGGTATTTTGGATGAAGTTGATCTCTTGGAACCTGGAAAATTGTAACATgcatcaattatttttattgactTAGTTTTTGCAAATAAATACATGAAAAATCATATGTTTAAACTGTGGAGAAAcatttgaagacatgattgatcatcgcagttatgcacacaacttaagcagttgtgaaattaaagcctcaataaattcaagcctgaatgggattc

Protein

Uniprot

Uniprot term	Description
Q8NF91	Nesprin-1 OS=Homo sapiens OX=9606 GN=SYNE1 PE=1 SV=4
Q6ZWR6	Nesprin-1 OS=Mus musculus OX=10090 GN=Syne1 PE=1 SV=2
M9MRD1	Muscle-specific protein 300 kDa OS=Drosophila melanogaster OX=7227 GN=Msp300 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001589	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR052403	Family	LINC complex-associated protein	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47535	MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005640	Cellular Component	nuclear outer membrane	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007097	Biological Process	nuclear migration	Interproscan
GO:0034993	Cellular Component	meiotic nuclear membrane microtubule tethering complex	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan