Detailed information of FUN_014769-T1 in Siderastrea siderea

Genomic Location: contig_12:2143396...2214664
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity|HECT · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00632
all species →
HECTHECT-domain (ubiquitin-transferase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043366
all species →
FamilyHECTD4Interproscan
IPR043136
all species →
Homologous_superfamilyB30.2/SPRY domain superfamilyInterproscan
IPR035983
all species →
Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR000569
all species →
DomainHECT domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46435
all species →
E3 UBIQUITIN-PROTEIN LIGASE HECTD4-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0042593
all species →
Biological Processglucose homeostasisInterproscan
GO:0004842
all species →
Molecular Functionubiquitin-protein transferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17849HECTD4; E3 ubiquitin-protein ligase HECTD4EC:2.3.2.26
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_014769-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
38TPM > 0
7Conditions
71.2Max TPM
7.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 8 5.93 30.62
holobiont · low.pH Control.temp 20 8 11.89 71.23
holobiont · control.pH_high.temp 20 8 4.47 40.65
holobiont · control.pH Control.temp 19 8 7.61 44.79
Whole organism 4 4 13.70 15.35
unannotated 1 1 6.28 6.28
live coral tissue/skeleton 1 1 10.47 10.47

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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