Detailed information of FUN_014770-T1 in Siderastrea siderea

Genomic Location: contig_12:2216092...2240679
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17942
all species →
Morc6_S5Morc6 ribosomal protein S5 domain 2-likeFamilyInterproscan
PF13589
all species →
HATPase_c_3Histidine kinase-, DNA gyrase B-, and HSP90-like ATPaseDomainInterproscan
PF07496
all species →
zf-CWCW-type Zinc FingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036890
all species →
Homologous_superfamilyHistidine kinase/HSP90-like ATPase superfamilyInterproscan
IPR041006
all species →
DomainMorc, S5 domain 2-likeInterproscan
IPR011124
all species →
DomainZinc finger, CW-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23337
all species →
ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24135MORC; MORC family CW-type zinc finger protein-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_014770-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
93.9Max TPM
5.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 1.64 32.90
holobiont · control.pH Control.temp 19 2 1.86 24.06
Whole organism 4 4 76.37 93.88
unannotated 1 1 42.55 42.55
live coral tissue/skeleton 1 1 49.97 49.97

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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