Gene detail

Detailed information of FUN_014860-T1 in Dendrogyra cylindrus

Genomic Location: contig_23:3063865...3069784
NR annotation: XP_020629245.1, eukaryotic translation initiation factor 4H-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_014860-T1

TGTTTTCTGGTGTTCTGTTCGGCCAACATGGCGGACGACTTCGACGGAAGCGGTGGCAGTGGCAGATTTTACGACAATTTTGGTGATGGGCCAAGGGATTATGGCTCCTCGTACGGTGGAGGAAGACGgcgtggcggtggcggtggtggAGGAGGACACAGAGATCGAGGTAGTAAACCTCTTCCAAAAGAGCCACCTTTTACTGCATTTGTCGGCGGACTTCCACCGGATACGGTCCAAGGAGATCTTGATACAATCTTCGCAGACATAAAGGAGTACATAAGAAGTATTCGCTTGGTTCGAGACAAGGAAACAGACAAATTCAAAGGATTCTGTTATGTTGAGTTTGAAGACCTTGATTCACTGAAAGAAGCATTATCTTTTGACGGCGCAATAATTGGAGATCTGGGGAGATCATTAAGAGTTGATGTAGCTGAGGGGCGTCGAGATGGAGGCCGTGGTGGTGGAAGAGGAGGGCGAGGAGGCAGAGGTGGATATGATGACAGGGGTGGAAGATATGGAGGCCAAGGAGCTGGAAACTGGGGCAatagaggaggaggaggaggaggaggtcaTGGCAATTGGAGtggtggaggaggaggtggtggCGGTAGCTGGGGTGGCCGTGATGATGGGGGCTGGGGTGGCAGAGATGACGGAGGCTGGGGTGGTAGAGATGATGGAGGTAGAAGAGGGGGGAGATATGGAGGAGGTGGCAGAGGTGGATATGGGGGAGGAGGGGAAAGAAGAGGTCCTCCAAGACAAGATGATTTCCGAGAACCATCAGCAGAGGAATTAGCAGCCAGGCCAAAATTAAAGCTTAAACCACGCACAGTAAAAGATCCTGTGAATGAAGTGGCGTCTAGTGTTCAACAAATGTCAATATTTGGTGGTGCAAAGCCAAGAGATGAAAATgaatatttgaaagaaaaaaagaaagaagagcgATCAAACAGCCAATCTAGTCAAAACAGTACATAAATACAAGGAGAAATTATATAAATTGATGAAGAGGCTGCAATTTTTGAAGTCTGATGACATTCAAAGCTTCTATGACTGGCTGTGAGAAATATGGCACAATTCTTTGTTTCATGTCAGCAACAACTTAGTCAAGGATTTCAAGTCCATGGCTTTGATAGAATTTGTCCTTCACGATTACATGCCGTTGCTTAAACCAGCCTCTAGATATCACTCACTCACTGTTTATCTGCATTGTTCAGACAAGCCATGCCTAAGAAGAACGTTTTAAATTGCTGTTGTTCGAAAGCTACTTTGTTTCTTTGCGAAATTTTAGATTCaatataatattattttgtacagcagataCTTTGCATACCATATTTCATATTGTAGTTTTAACTTTCGCAGACATGAAACTGTTTTTCATGGAGTAGACAATATCGAAATATTCAAAGTATACCGAGGACAGCAACGTCCTCAGGTATACAGTTTTTGAATGTCatgtttgtgttttgtttttcttggtcTGTCTTGGTTAAACGAGCATTGCCCTGTCTGAGAATTATTGTTCTCAGtttatttacaaattttcaTTAAACTTAAAACCTATGGAAGTTACAGactaaaaggaaaataaaattcattcTCTGTTGTGAACAGTTTATTCTCTCTTACGCTGACAAAGGGTTTAATAAAATTCCCCGTGTTTTCAGTCCATTGAGATATAAACCTGTTTTTAGACTCAAATCAATTCTGGTTATTGCCGTTCTGTTGTACACTCAATTGACCAATCAAGGTCATTTTACTAAGAGCAATTTTCTGATGACTGTCGTAAAAAAATCACCTCGGACCAATCACAACCCAATCAGCTAACTTGGTgtcgaagcgcgggaaaacgcgcgtACGCCAAATCACgtggttttgtttttgtttctgattggttgaaaaaagcAGCATTttcttctgattggtttaaaggGTGTTAAGGTTACAGCACTTGGCACGAGTTGCTTGACCAATTTTCAAGCTCGGCAAATTTTTCCGGACAGTCactttgaaaactgctctatttagCAAAAGATGTTTTTCGTATAAGCAATAACTTTTTTGGGACTCGGGACTGCATAGAATGCTGTTGTTTATTACGATTTACTCCAACTTCCAAAAAGTTGCATGTTAAACTAGTGAATTGTTTTTGTGAGACTGCGACTTCATCATCGCCATGTTAtagtatttaatatttaaatatCTACTCTGTCAGCCagtttaaacaaataaaaacgc

Protein

Uniprot

Uniprot term	Description
Q15056	Eukaryotic translation initiation factor 4H OS=Homo sapiens OX=9606 GN=EIF4H PE=1 SV=5
Q9WUK2	Eukaryotic translation initiation factor 4H OS=Mus musculus OX=10090 GN=Eif4h PE=1 SV=3
Q5XI72	Eukaryotic translation initiation factor 4H OS=Rattus norvegicus OX=10116 GN=Eif4h PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034229	Domain	eIF4H, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24086	EIF4H; translation initiation factor 4H	-	Translation factors	ko03012	deepkoala