Gene detail

Detailed information of FUN_014867-T1 in Acropora pulchra

Genomic Location: ptg000009l:3801112...3814310
NR annotation: XP_029193978.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114959946 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_014867-T1

Transcript

FUN_014867-T1

ATGTACGGCACAAAATTAAAGAAAACGGATGATCGCCTGACCTACTCCAACTGTACATGTGTCGTGGGAGACTTGTCAAAAGGTACTTGCACGGTTGACCATCCTTGCGGCCTTAAATTCCTGATGTTCCTAGTACTATATTCTCTGGCGGGATTTTTATTCTTTTTGAACTTTTCTCCAGGTTCGATTGTGACCATAAGGTGTGTCCCAGTGAGTCAACAGTCGTACGCTTTAGGACATCAAATGAACCTTACTAGGCTGTTACGAGCGATTCCAGGCCCAATCGTTGTTGGGGCCTTAATAGATACAGCGTGCATTCTTTGGGATTCAAAGTGTGGAGAAGAAAGTTATTGCAAAGATAATTATGTTATCGCTATAGCGTACTACTTGAGCAAAGCCGACAGTAAGCCCTCTCAGTTGCCTAAAGTTATGACAGTATTTCTGTACAATAAGGAACTATGGGAAAAATTCAAAGAGCACCAGACAGAGATGATTATTTCAAAAGAAGGAAGGCGTATGCATCCAGCGATTTCATTGGGATTTCAAGACCTTAATCCCGAGCAAAAGTATGCAGTTATGATAGATTTCGTGTGCTTAGATGAATACAAATACTGCTTTGATTACTCATCCAATCGATGGACCCCTTGGCGAGAATCGAAGCCGGAAGAAGATGCATCAAGATCCATAATGTGCCTTCATCCCGAGACTCCAACGACTGGGGCCATTCTCATGGGACGTTTGCTAACTTTCCAAAGATTGAAGCTGACAAATAGTTACCAAACGGCTTCCAAAACATTTCAAGTGCTGCTGCTGAACACTATGAGGCGCTATATTCCTCGCATTCATTTGATTGAGAGTACTGACGGCAGCAACTTTGACTTTAACATGAAAAAGGAATTTTGTTTTCCTGAAACGGAGTTTATGGCAGTGTCGGCGTACAGGAATAAGCAGATCATCAAACTTAAAATAGACTCCAATCCTTTTGCTTCCGCATACAGAAACAGTGGCCTCCATGGAAAGGCTAAGAGGCGCCGTACGGAATGCAGCAACGGGGGCGTCGACGAAGGAGAAGCAGGCTCAAATGACAATTCATCAAACGGCAATAATTCAAGCGTTGAAGACAATCTGAGTGATAACAGAGATGACAACAACTTTGAAGATAATGTTTGTTCGAATCAGCATTCAAGTTTGGAGGAACCCGCCCCGTTACAATTATATGACGAGCAACAGTTGAACGATATGCAGGCGGTGTTACCATTTCTTAAAGATCGACTACGGAGAGAGGTATCGTTCTTCGTGTACAACCCAGCTAGCAACCGGGGATACGATCGAACACGACAGGCGGAACAGCACGCTTTGGACCATGTTTACACAAAGAATGCAACACAACAGTCGCAATTGGCTTGCCTGGGGTCCACAAAATGCAACACCAACCAAAGTGATCAGGACGGTTCCGAGTCTAAATGTTCTGAACTACGAGGCATTCTATACAACGAGAGGGTGCAATCTGGAAATGCAACGAAACATGACAATGAAATCTGTGATGTTACAAACGCGCCGAAAATAGAAGACGAGATGGGTGTTGCTATCAAAGGAAGAAAGAACAGAAGAAAGAAGTACTTACCCAGGAAAGTGCAACGAGCAAGTGATTTTTCTGTCACAGCCGATATCTTTAAAAACAAAGTGAAAAGCTCTGAAACGCAAGCAGAAGAAGCCTGTTCTACAAAAGGCGATGCGGTGTCATTTGATTTGCAGGACGTCACCTGTTCTAGACAAGGGACATCTTTAGGATCCTTCGATTCAATGGCCAGCTTCCGGGAGAAAACAGAGGATGCTTCGTCATTAAAAGAATCCTTAAATAATCAGGACGAGGACCTCATGGAGTCAAGTAACCAGGACCAAAACTCCGCCTTGGTGAGATTTCAGGAAGTAGCTGAATTACAGGTCGACAGCCAATCAAAGGCAACTGAATCTGACACCAAGGAACCGAAGGATTATAGTCCACGCCCCACGCAGAAAGACATTGGTACTGAATTGTCTTCCGTTTCAACAACTGCTTCCAGACCTCAGGAAACAGTGGATTCGTCTCTTAATGCTTTAATCCAGATGTGCTCTAACGCAGAACAATCTTTGAACGACACATCGTATCAATCGTGCTCGAGAGAAGAACATGACATGCTTTGCAGAAAATCCTCCGTACAATGGCCTACTCTTTCGCAAGTTTCTGAACAGACAACGAGCACGATAAATTTTACCGAATTCATTCCCCCGCCAAACAAAGAAATAAATGAATGTCCCAGAGGTGTTTTCTCCGCAGAATCGGCATTCATGTCTGAAAGTAAAAACAGATCAAATCTGGGACCAGACGTCTATGGGACACTCTTTTCATCTTCTCTGTTGTCCCCCTCGTCAGCTCAGAGCAATGCAACATTCGTCTCGCATAACAATACCGGCCTACAAGTAACCAAACCAACGTCTTCTGCAGTTAGAGGCAGTCAGGGCGTTCGCTCTCAAAGAGAAGAGAAAGATTCGACAACAACAATACGTCAATTTCAAACTACTTGTACCGTAGAACTGGAGGAAGTATCACGTAACTTTAATCCAACCATAGCTACCCCAGGACCATGTTATGTGAATAAATTCAACGACAGACGCCCGCTTGAATATCGCCCAATCAACCTCGCTCCAAATCAACAAGAGGGTACAAGAATCAGCCACCTAGAAGATGGCGGTTCTGGTAGTGACACCAGTCCGCATCCCATAATTGTGAACGTGTTCTCCCTTAACGAAAATGCTCAAGTTGTTGCTACTGGAAAAGAAAGCTTGAAAGCCTCATCTTCTTATCCTCACTTTTCCATTCCCCAGAATTCACATCAATCACTAGGTAATGAAAAATCCTTTTTGAGACTCGACACAAATGGAAAGGACCACCATCGCTCTTCCGCAGGGCTAATTAGCCTTGATAACACTGTATCCAAACAAGCTCCTTTGGAGAAATTTTATTCCTTTTCTACACTAAAACCGGACAGTAAACAACACTCTGAATGTTCCCGTCCTCGACTTCATGGAAAACGACACTACAAGACGACACGAACAAACTTCAGTCGTTTGAGCTTAGAACCGTTGTGCAGTGTAATATATCCGCTGAAACGCTAGTAAGGTTTTCAGATCACCTATTAAGACTGCTTAATAAATAGGCATATGTTCCGTTTTAACTCTTAAGAATATGAATTATGAAGAATGCAACACACCAATGTTAAACCTCTTTTCTGTAGGGAGTTGGCTTGATCGCTTTGTTGGGCTTAACTAATGTTATTTCTTTGTTACGGTTAGTTCTTTGATGTTTGTAAATATTAAACTGCTATATTTTCTCCCTCTCATTCTTGTTTTATGTCACCGTTTCCTGCTTTTAGTGACCCATATCTAGATTCTCAACATCTGTCCAGGTCCTCGATTATTTTATGTCCCTTGGTTTCTCTGGTTAGTTCCGGACTCTAATCCAACTTACGCCCAGTTACACCAACGTTTCCCTTCAATGCCCGGGGCGCTGTCGTGACTTCAAGGAGCTGTACCACTGTGCAAGAGGGTTAGCACCGAAATCGTATCGCATCTATATTTATACCGCGTCACTCTGAAAAGTTGAATGAGTTGTGCGCAAAGTAGAAGAGAGTCTAATTCTTCCAACGATTTCTGTAACTAGGTTTCGGTCGTACCAAGAATGTGACACTGTGAAATACTGTAAGACTTGTCAGCAAGTCATTTCCCATTGACGTTGTGCCAGACGTTACAAGAAATGTTATTGGTGTAAGCTATCTGCCATAAAGGAGGCTCCATACACAGAGTTGATATTCGATGAAATTTCTCAAACTGATTAATAATTCATGAGCCCAAAAGCCTATCAACAATAGATAAATTCGTCACGTGCATGACTTCTAATACCCAGTGAAAACCTAGATGAAAAGCACACGTGTTTTGGTTATCATATCCAAACCACACGTTGTTTTCATCTGATTCCTCATTGGATATCAAGATTTACATATCAAAACAAAAGAAATTAAACAGCGTTTCTAATAACTCATTTTCCACTGTTTACAACAATGTTTACATCAAGACAGCGACGGAAAATGGCAAAACTGCAATAAAAATAAAAAAAATTGTTCAGAAACAACATAATAAACGCAGATTTCGTAGACAGTATTAAAATAAGTCTTCGACCGCTTACCTTTTATCTTCCGGTTGCTGTAGATTAAATGCTTCGCTTCCCACAGATTCAACAAGGTGCCTACGAATTCCCCAGATGTTGCCGTCACGGTAAAGGGTCCTTGCTGGATACCTTTTCCCCTTCAGCATTCGCAACCTCTTGGACACATTTGCTGAGCCACAAGTTTAACGAGCAGGCATCCATAACTTCTAAATCAGTGCTCAACGGCTGGACTTTGTGCAATTCACAGTAAACTTAAAGGCTCCGCCCAGATCAAGCGCAGGAACTTCAACTTTCCGACTAGCTTTCCAGTTGCAAAAACCTTTGACCGCCCATTTGTTTTTATAGATTGATGACTTTGGAATACTTTCTTTTAACAAGTTCGACGCGTCTTCTGCAGTTTTTGGGCTACGGAAACAGCCTTCGCTGATTTCTTCAAGAGACACTACCACCTTTCACAAAGGCATTAATGCACGGACTGACACCCAAATAAGAATTTTCAGCACCACTCAAAATTTGCATTATTGATATATCTGGGGAATGCAGTACTGTTTAAAAAGCCATATCAAAAAGTCGTGCTCCGTTTTTCATCATAGATTCCAAAAACCTCGAAACAATAAAAACCTCCGTCGTTCGGTCGCGTGCTTTCATTTAGTTTCTCAGTGTGTGGAACCTATGATGAAACACTCGCACTTGTTGCTGATATAGCACATGAGGGTATGCACGAGTTATTTCACCTTTCACTATCTGACATACTTAACTTCCAAATGAACTTTCAATACTTACAAGTCATTTCTCTGCAAAAGCGAGGGAAGAGTTAATCAGAACTTATATGGCGATTGTTTCAATTGAAAATCATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8UW76	T-box transcription factor TBX20 OS=Gallus gallus OX=9031 GN=TBX20 PE=2 SV=1
Q9ES03	T-box transcription factor TBX20 OS=Mus musculus OX=10090 GN=Tbx20 PE=2 SV=3
Q9UMR3	T-box transcription factor TBX20 OS=Homo sapiens OX=9606 GN=TBX20 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000393 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03137 all species →	OATP	Organic Anion Transporter Polypeptide (OATP) family	Family	Interproscan
PF00907 all species →	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004156 all species →	Family	Organic anion transporter polypeptide	Interproscan
IPR046360 all species →	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001699 all species →	Family	T-box transcription factor	Interproscan
IPR036960 all species →	Homologous_superfamily	T-box superfamily	Interproscan
IPR008967 all species →	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267 all species →	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_014867-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.