Detailed information of FUN_014949-T1 in Siderastrea siderea

Genomic Location: contig_12:4984567...5000191
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_014949-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR026506
all species →		FamilyGDP-L-galactose/GDP-D-glucose phosphorylaseInterproscan
IPR036265
all species →		Homologous_superfamilyHIT-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20884
all species →		GDP-D-GLUCOSE PHOSPHORYLASE 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006006
all species →		Biological Processglucose metabolic processInterproscan
GO:0080048
all species →		Molecular FunctionGDP-D-glucose phosphorylase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15630VTC2; GDP-D-glucose phosphorylaseEC:2.7.7.78
Enzymes with EC numbers-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_014949-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
65TPM > 0
7Conditions
852.1Max TPM
228.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 15 254.16 845.25
holobiont · low.pH Control.temp 20 13 243.93 829.58
holobiont · control.pH_high.temp 20 17 270.40 852.09
holobiont · control.pH Control.temp 19 14 207.74 837.03
Whole organism 4 4 17.10 17.29
unannotated 1 1 14.25 14.25
live coral tissue/skeleton 1 1 28.47 28.47

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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