Gene detail

Detailed information of FUN_015029-T1 in Acropora pulchra

Genomic Location: ptg000009l:5434543...5448334
NR annotation: XP_029192707.2, Fanconi anemia group J protein homolog [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_015029-T1

ATGCTGGACAAACTCAGCAAACGTTGGCAGGTAACAGGTTTGTGGTCCAAGCTCTTGGACAAAAAGTTTATTGTCAGTGAACCAAGAGGCGGTGACAAATTAGAATTTGATGACATAATGCACCAGTTCTATCATGCTGTGAGAACTAGTGAAGATGAGGAATGCACAGATTCAGATTCAGATGTTGAATCATCTGTCGACGGTGGCTTGTTCCTGGCTGTTTGCAGAGGAAAAGTCAGTGAAGGGCTCGATTTTGCTGATAACAATGCCAGAGCAGTCATCACAATTGGCATTCCCTTCCCTAATGTAAAGGACATACAGGTGGAACTTAAACGCAAATACAACACCCATTATGCAGCCAGCAGAGGCCTTTTAACAGGCAGTGAGTGGTACGAGATTCAGGCCTACAGAGCTCTTAACCAGGCTTTGGGTAGATGCATTCGCCATAAGCAAGACTGGGGTGCCATTCTGCTGATAGACGAACGATTCAACAAGTCTTCAAAGTATACAAATGGGATATCTAAGTGGGTACGAAAACGAATCATCAAATACGATGACTTTGGCGAGGCAATGACCTCGTTGAAACAATTCACGACCGCTCGTAAATTAGATCCTTGTCCCACACCCGTCGTGGCCTCACAAAGCTTGCTGTGTGCTAGCACTCTGGAGACTCCAACCAAGGAAACGAACTTGAACTTTGATAGGAATTTATCCATGGATTCTACTCCGCTTAGTGAAGTCCCACGTAGTCATAATGCAGGATTCACACCTGGACACTGTGTCAACGGTGATCTGTTAAAGAGGGTTGGTGTAGACACACCAGCTAAACCAATCAGTGTCCACACCGATGCAAAACCTTCTCCGGAGAGCTCTTCGTTGTGCAAAATCCAACTTAGTGAAAGCTCATTGCCTGTGTTGACACTTCAGTCTTTAGCAAACGCTGAACAACTCGATGAAATCACAGAAATAAGAGTCGCCGATGGGTCATTTGTTAAGCAAGAAGCAAATGCAAATTCATCAGTAAAAGTGGAGCAAAGCGCTTACACTGACGCTATGAGGATTCAGCAACCACAACTGAAAGAAGTCCTGGATAACCAAAGTTGCATTGCTCCTCACTCTCCGAGGATTGATATCATTTGTGCAGATGGCACCCCTAAGAATCAGAAATTCGTCAATTCTCATAGGAAGAGCTTAGAGCAAGGAACACAAGAGAGAAAGGTGTTTAATGGAAGGACGTTGGTTCTGGACTGTAGTCAGAAAAATGGACTTAGCTTAGGTAAAGGGATATTCAGAAAACCGTTCAAACCTCCCGAAAAGCGTGAGAGCACAGTGTTAAACTGCGCCAAAACAAAGAACTCTGAAGGTGAAGGATTCTTGGAAGAGCAATGCTGTTCTTCTCCTGAGTTGTTTGCCACTCCGAGCACATCACCAATATCATCTCCCAGTGAACAAGGAGATAAAGAACTTGCAATCTCAGAGAGTGAAGACAGAACTTGTGCAAAACTGGAAAGCATTAATCTTGCTTGTCGCGAACCAAGTAAGATTGAGAGCACCGAAAACCAGGCGGTAAATGCGGGAAGGGACTCAGATCAATATGAGGGAGAGGACAAAAAAAGTGAACTTGTTGTAAAGCAAGATATGGTTGAAAATTCTGTTACAACCAACACAAACAATGAAACTGTCCCTCCTGAAAGAAACCTTCATTTCAGGTCGAAAGTAACGCTCTGCACTAACGCTCTACAGCAACGCGACTTCCTCGATGACGTCAATGATGACTTTGCTGAGAAAGGTAGTGAGATAAAAGTTGAATGTGATCCTAAAATCCTGGAAGTTTCTTCAAAAAGGGTTGAAAGCTCGTGTGGAAGCGTCTCTAAAGAGTCAAGCAATGAGCCGCGAAATAGAAGGAGAAGCATGAGGCTTCGAAAAAAATCAAATACAGCGAAAACATCTTCGAAGACACGCGAAGAAAACAACGAGGAAAAGACAGACGTAGATGGTGACAGAGCTCTTTTATTTTGTACCCACTGTGGGGCTGGCCTTGTCAAAGGTAGCGTCACGCCCAAGCCCTTTCCAAAGGATACCCCTGACGAAATACTGCAAGCTGTTAACGGCGAAAAAATTCTTATGATTGATAGAGATGATAGCGAAGTGTTAAATCTGTGTCCTTGGTTTGCCGCGGAAACGAGTCATAGCTCAGGTCTAAAACTAAACAGCCTCTTTGTGCCGAAAACCGACACTTGTTACATCCCTCAAGTTTGTAGAAGGTGTCACTCAACTAGGAAAAATTCGCCGATGGTGGGCTTTGAGTTTGTGTCATTTGGGTCATCTTCCCTAATTAAACAGATCTGGCTGTTTCCTAGTGTTGTTTACGTCGGCAACCAATGA

Transcript

FUN_015029-T1

AGCACAAATAGTGTTAGAAGCATCTTAGACTAACAGAACTGGTGTAATATTCATATGTGTTTTTGAATTCAGGTGCAGCTTAATGTTTTAATAACTGTAATAGATTTATTTTAATTTACTACTGCTGATATCCCTTGTTTCTTTTTTTTTTCTTTACCCTCTTCCTCTCTGTGTTTAATGTCATCCTCTCATATCTCTTTGCTAATGCCATTGTTTAGACAGTTCCTCATGGCGTTCTCTGTTTCTTTCCATCATACAACATGCTGGACAAACTCAGCAAACGTTGGCAGGTAACAGGTTTGTGGTCCAAGCTCTTGGACAAAAAGTTTATTGTCAGTGAACCAAGAGGCGGTGACAAATTAGAATTTGATGACATAATGCACCAGTTCTATCATGCTGTGAGAACTAGTGAAGATGAGGAATGCACAGATTCAGATTCAGATGTTGAATCATCTGTCGACGGTGGCTTGTTCCTGGCTGTTTGCAGAGGAAAAGTCAGTGAAGGGCTCGATTTTGCTGATAACAATGCCAGAGCAGTCATCACAATTGGCATTCCCTTCCCTAATGTAAAGGACATACAGGTGGAACTTAAACGCAAATACAACACCCATTATGCAGCCAGCAGAGGCCTTTTAACAGGCAGTGAGTGGTACGAGATTCAGGCCTACAGAGCTCTTAACCAGGCTTTGGGTAGATGCATTCGCCATAAGCAAGACTGGGGTGCCATTCTGCTGATAGACGAACGATTCAACAAGTCTTCAAAGTATACAAATGGGATATCTAAGTGGGTACGAAAACGAATCATCAAATACGATGACTTTGGCGAGGCAATGACCTCGTTGAAACAATTCACGACCGCTCGTAAATTAGATCCTTGTCCCACACCCGTCGTGGCCTCACAAAGCTTGCTGTGTGCTAGCACTCTGGAGACTCCAACCAAGGAAACGAACTTGAACTTTGATAGGAATTTATCCATGGATTCTACTCCGCTTAGTGAAGTCCCACGTAGTCATAATGCAGGATTCACACCTGGACACTGTGTCAACGGTGATCTGTTAAAGAGGGTTGGTGTAGACACACCAGCTAAACCAATCAGTGTCCACACCGATGCAAAACCTTCTCCGGAGAGCTCTTCGTTGTGCAAAATCCAACTTAGTGAAAGCTCATTGCCTGTGTTGACACTTCAGTCTTTAGCAAACGCTGAACAACTCGATGAAATCACAGAAATAAGAGTCGCCGATGGGTCATTTGTTAAGCAAGAAGCAAATGCAAATTCATCAGTAAAAGTGGAGCAAAGCGCTTACACTGACGCTATGAGGATTCAGCAACCACAACTGAAAGAAGTCCTGGATAACCAAAGTTGCATTGCTCCTCACTCTCCGAGGATTGATATCATTTGTGCAGATGGCACCCCTAAGAATCAGAAATTCGTCAATTCTCATAGGAAGAGCTTAGAGCAAGGAACACAAGAGAGAAAGGTGTTTAATGGAAGGACGTTGGTTCTGGACTGTAGTCAGAAAAATGGACTTAGCTTAGGTAAAGGGATATTCAGAAAACCGTTCAAACCTCCCGAAAAGCGTGAGAGCACAGTGTTAAACTGCGCCAAAACAAAGAACTCTGAAGGTGAAGGATTCTTGGAAGAGCAATGCTGTTCTTCTCCTGAGTTGTTTGCCACTCCGAGCACATCACCAATATCATCTCCCAGTGAACAAGGAGATAAAGAACTTGCAATCTCAGAGAGTGAAGACAGAACTTGTGCAAAACTGGAAAGCATTAATCTTGCTTGTCGCGAACCAAGTAAGATTGAGAGCACCGAAAACCAGGCGGTAAATGCGGGAAGGGACTCAGATCAATATGAGGGAGAGGACAAAAAAAGTGAACTTGTTGTAAAGCAAGATATGGTTGAAAATTCTGTTACAACCAACACAAACAATGAAACTGTCCCTCCTGAAAGAAACCTTCATTTCAGGTCGAAAGTAACGCTCTGCACTAACGCTCTACAGCAACGCGACTTCCTCGATGACGTCAATGATGACTTTGCTGAGAAAGGTAGTGAGATAAAAGTTGAATGTGATCCTAAAATCCTGGAAGTTTCTTCAAAAAGGGTTGAAAGCTCGTGTGGAAGCGTCTCTAAAGAGTCAAGCAATGAGCCGCGAAATAGAAGGAGAAGCATGAGGCTTCGAAAAAAATCAAATACAGCGAAAACATCTTCGAAGACACGCGAAGAAAACAACGAGGAAAAGACAGACGTAGATGGTGACAGAGCTCTTTTATTTTGTACCCACTGTGGGGCTGGCCTTGTCAAAGGTAGCGTCACGCCCAAGCCCTTTCCAAAGGATACCCCTGACGAAATACTGCAAGCTGTTAACGGCGAAAAAATTCTTATGATTGATAGAGATGATAGCGAAGTGTTAAATCTGTGTCCTTGGTTTGCCGCGGAAACGAGTCATAGCTCAGGTCTAAAACTAAACAGCCTCTTTGTGCCGAAAACCGACACTTGTTACATCCCTCAAGTTTGTAGAAGGTGTCACTCAACTAGGAAAAATTCGCCGATGGTGGGCTTTGAGTTTGTGTCATTTGGGTCATCTTCCCTAATTAAACAGATCTGGCTGTTTCCTAGTGTTGTTTACGTCGGCAACCAATGATCGTCAAGTGATCACGGAGAAAAGATTGTCCCAGTTGTAGGTAGAATAGGCCATTCCCGAGTTAACTTCAGCCTCTATTTCAAGGCGAGTCTACGTGCTAATATCAGCCTTCATTCATATTGAAATTAGAACTAAACACCACAACAAAAAATTTCGCACTTAGATTCACTTTGAAAGAAGGACTGAGAGGAACTCGCAAATGGTCTGTTACTGTCAGTAGAGTTGAAAATGGAATGCTTTGAGATCTCATATTCACTCAAGCACTCTCGTCCGTTTTGATCATTAGTTACTTTGCCTTTTCACTGGCAAGGTTTTTAGCCCCTTATACCAGAAGGCCTGAACTCTTGTCAACAATCAGACCCCAGTTGTTTAAAGGTTGTGCAGTGCAATCCAACGGAAAAATCACCATTCATTGGATTAGTTCTACCAAACTCTATTATTATCCAGACTGGCGGACAGTTGTGACCAATGGCAAGCGCCCTTAGATACAGAACCCTGCTTATCTTAATTTGCCGAGGCAATCGTGGGACTTGAATACCTCGTTTTTTGTCGGCCTCGTGAATTTATAATTGCCTTTATTTCTTGCAAATCAAATTAATTTTCTAGAAAAATACACTATACAGTGATAATTGTGTCTGAAGGTGATGCTTTAACTCACTCTCTCTCTCTCTATATATATTTATATATATTTTATATACATTATATCTAAATTATTTCATCGGACAAAATCATCTAAGTATATATTACTGGCCCTGTACTTTTTCCTTGCCCCATTCTGCATTTTTATTTCTGAATTAGTACATCAATTACGTCATTCGCATCACGCTTTTCTGTTGTTCTGGTGCAGCGTTAACGTTTTCAGCCAATCGCGAAGCAAACTCGTTTCACAGTATTGTTTAAAAGTCTCTTTGCGATCTTGTGCAAATTTAACTCATTTACTAAACGACCTTGAATATCGAAGTATTTGAAGGCAGAAGACTACTATTTTACTTTAGTTGTCATGTAACACTTGTTGCCACCGTGTTGATCTACGAACGTATTGCGAGTCTTGTCCAGTTATCAATAAATCGCGTTTATGTAAAGATGTTACTCGTGTTCATGACATCTTGTGTCCGTGCGTGTAGATCTTTTCGTGTATTCGTTCTTATCCGGTTCATATTTCACTAGTGTTGAATTCATCCTGGCTGGTCCATGTGTTACTCGTTCCTTTCGTGGGCGAACTCGCCTCTGTTCTGCCTGTTTATTCGCCAAGACCACAGAAAAAGTACAATAACAAAGATGAATACCAGTAAGTGAGACATCAACGAATATTTAGCTGCTGTTAGTTTCTCTTGAAGGAGAAAGCGATACTCATGGATTTCATTTAATCTCTCTTGCCCCTCGTTTTGTAGTGATTCCAATTCTCCGATTACATTCGTCAGAGCCATGTGAGAATGTAGGCTCGTTGCAGCAGCAGTTCCTGACACAATGGCTCCTAGTACATTTTCATATAGTAAAGATGTCAGTAATACAGGTAGAGACCTTAGCCCGGTGACACTTGCTCTTATTTTCTCGCTCTGAGCTTTTATGATGTCTTTATGTATTTCTCGTAACAGCTGTTTAATATCCGAATGAAAGCTATCTAGCTTTGCAAGAATTTCTTCTGTAATTTTTTCGGTACCCCCGGTAGGGAAATATTCAGAAGCTGGCAATATTTGGTTGTGTATCAAATCTAGGACTGAATTTAGTTCCATTTCTAGCCACTCAAACTCTTTCTTGTACAACGTGTTGTCCATCTGCAAGCGCATTGTCTGGTCATAAATGTCTACAGCCCGTGACGCCAAATAAACCGACACTAAACACATCCCTGGACTTTGCTTTGCAATGTCGAGGGAATTTTTCCACAGTTTTGGGGCCTTTTGGATGACATCTTTTACCTCATTTGGAATCAAGCTCCGAATTGCTCTCCAGTCAGCACTTTTGTAAAGCTTGTACAGGTCTCTAAGACAGCTGACAATGTTCGACACGAGCTTCAGGTCAATGGTTTCTGTCATACCGTAGTTTTGAACAACCTCCGTGCATCCTTTTGGAATACTGATTGCAGGAGAAGGAGATACCGGACCGAAGTTGAAACAGAAGGCTGCGACCAGTAAAAGCGAAAAGCGGAAGTACTTCCGGCCTTGCGTTAACATTTCGCGGCTGTAGATGTTCGTTTCGGGATTCCTTTTTGTTCTGTTCAACGAGAAGACAGTCAGGATGTTTGTTTTCGTAATTTCAAAGCCTCAAACCGCCAAGAAAAACCTCAATTTCATTCGAGGACCTCCATGTTTAGTGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A8J1M587	Fanconi anemia group J protein homolog OS=Xenopus laevis OX=8355 GN=brip1.L PE=3 SV=2
Q5SXJ3	Fanconi anemia group J protein homolog OS=Mus musculus OX=10090 GN=Brip1 PE=2 SV=1
Q3YK19	Fanconi anemia group J protein homolog OS=Gallus gallus OX=9031 GN=BRIP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001317 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13307 all species →	Helicase_C_2	Helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045028 all species →	Family	Helicase superfamily 1/2, DinG/Rad3-like	Interproscan
IPR006555 all species →	Domain	ATP-dependent helicase, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11472 all species →	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:1990918 all species →	Biological Process	double-strand break repair involved in meiotic recombination	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0016818 all species →	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10803	XRCC1; DNA-repair protein XRCC1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.