Gene detail

Detailed information of FUN_015052-T1 in Acropora pulchra

Genomic Location: ptg000009l:5645614...5654950
NR annotation: XP_029190802.2, LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 3-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFQ2	Nuclear cap-binding protein subunit 3 OS=Xenopus tropicalis OX=8364 GN=ncbp3 PE=2 SV=1
Q8BZR9	Nuclear cap-binding protein subunit 3 OS=Mus musculus OX=10090 GN=Ncbp3 PE=1 SV=1
Q5ZM19	Nuclear cap-binding protein subunit 3 OS=Gallus gallus OX=9031 GN=NCBP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006250 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10309 all species →	NCBP3	Nuclear cap-binding protein subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019416 all species →	Family	Nuclear cap-binding protein subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16291 all species →	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0000340 all species →	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_015052-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.