Gene detail

Detailed information of FUN_015061-T1 in Acropora pulchra

Genomic Location: ptg000009l:5719317...5724448
NR annotation: XP_029190942.2, SRR1-like protein [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_015061-T1

ATGGCGGATGCAGAAGGGTTTGAAGTTGTTAAGAAAAGGAGAGGACACAAGAACAGGAAGTCCGACGAAAACTATAGGCTTGTAAAATTTAATTTAAAAAGGAGTTCATTCTTCGAAACTACTCAGTTTGATCTGAACCAAGTAAAGATGAACATTGACAAATACAGAACTGAAATTTCAACAAGTGAATTTTTTTCACGCTTCCAAGGGTTGTTTTTCAATGGTAGGTTAGTAATTGACCATTCCAGCTCCACTGTAAATGCTGAAAGTAATAACCCTGCAGCCATTTTGATGGATCCTGTGGTAGATATTGTTTGTTATGGTATTGGAAGAATAGCATCTTGTCCCATAGCAAGATACCAGTTTGCCTTCTTGCTGTTATTGAGAGAGATCCTGCAGATAGCTGGTCATTGCTTTATATATGAACCTCTGTTTTCACAAGATGAAGTAGAGACAGTAAAGGAACTTGGATGTTCTCTAATCCAAAGCAATGAGGAAGGAAAGAGAAAAGTTGGTCAAGTAACTCTATTTTTCATGCTTCATTGTGGCAAACCTCTTTATAACAGTGTCCTGTGGGCAAATTGGGGACTAGGATTATCCAATGTCGTCATTCTTGGAAATAGGTTTTCTAGTTATAAAGAAAGAATTCCTTCCAGACAACTTATGCATGAGGCATGCTATATTTATAATATACTTCCATACACAGCAGAAACCCCAATTCACAACTCTTTTTGCCACAGTGACATTTTCAATGACTCTTCAATACACTGGTTCCCCTGGAAAGTGCTTTTAACAGCACCGCTTTCTGTGTGGGAAAACTGCAAAGAGCCAATTTATGATTCAAATGACCCTGAAATTATTACAAAAAGTTCATCAAGTTAATCACCTTTGCTATCATCCCTTTCCAATGCACTCTTCCTAAAAGAGTATACTGCAATCACGATTTTTATTATTTTTATTGACAGAGTTGTTTTTTAATTTGATGCCTGGTACATGGAAACCAGAAATCTCGAAGGTGTTTTTCGTAAGATGTTGACTCGCCACAAAAGGCCTGTGTGAACTAGAAAGCCCTGTGCAGTTCTCACTAAGCTGCTGGCAAAGACTTGTCAGTGTATCTTGTCACACCCTTTTGTAACAGACCCAGTGGCATCTATCACTGGGTTTTCGAAAAAACATCACCGGGTGGGAAAATTTTCCACCAGGTTGCCCCTTTCTGTCAGGCCAATGTTTTGCCCGATTAAAAAGTGCTGTTTAAAGTCCCCACAAAGTTTGAGAAATGAAACAAAAATCCTTATTTCGTTTTACTCTGAGGAAGTCTGCATATCGATCTTATAGTCACCGTATGAAGTCATTCCAAACTTTGTTGCTTGCACACATTTTTTTTTTTCAGTTATTTCATCAATGATGTTACAATGCTTGAGTAATTCCCTCTTTTCTCCTTGAGGCACTGGGGCCATCTCGGACGTGTGATCAGTAACCGCCTCCACCTCCGCCAAAAGAGAAAACCTTTACTGTCGAATTTTGACCCAAGAATTTGCAAAGAAAAAGGAGAATTTCCTTTTCGTTGCTCCTGTGTCTTCAATTCACGAACGTCTAGCATTTGTTGTGTTCGCGCATCTTCTCTTCTATAATGTCAACCGGTTTCAGAAACGGGCTAGAATTTTAAGCCAGAGCAAACGGGCTTAAAAATTTGCAAAAAGGCCATGTAATCGAAAAGGAATTTTAGCATTGGCTGAAAAGGTAAGGTAAGCATACTGGGGTTGTTTTCTGGGAAACAAGATAGCCTCATTAATGACCCATTACTGAAATGTACATCTAGTGATCCAGACTGTGTAAATTCTTAATTAGTTTTTGTCTGAAACACAACAGTTAGCGAAATGTGAAAAATTCAACCCAAATTCATCAAACTTTGATTCACCGCGGCCGGCATTAAGCCTCATTTACACTAGCAAGTTTTCCTTGACAAGTCCCGTTGTCAAGGAAAACTTGTTGACTGTACGCACTAGCAAGTTCTCCTTGACAAGTTTTCCTTGGTAATGTAAATGGAAAATATGACAAGTTTTCCTTGACAAGTGCACTTGACAAGTAATTTACACCAGCAAATATCGCCATTGACAAGTTTTTCCTTGACAAGTGTCCTTGTTCAAAAACTAGCATGCAAGATTTTGAACAAGGGTACTTGTCAAAGAAAAACTTGTCATATTTTTCCATTCACACTGCCAAGGAAAACTTGCTAGTGTAAATGAGGCTTTATTGGAAAACATCGTGGGTTTTTCTGTTAATCCTATTAGTTTTGTTGTTTTTTTTTTCTCGCCAATTCGAACAAATTGGGCCTTTTTTCATGTTTTTAGATACATGATGCACGTTAATATAAAGGCTGGAAAAAGAAATGTGAATTTCTTTGAGCTACTGGAGCTCTGAATATTTCATGACCAACTAACCAAAGTTCTTAAAAAATTCATGAGCTCTGGCTTCTTCTAAACGATTCATAATAATTCACTTTGTCCAAACGTACACAATTTCTTTGTGCTTTCCTGGCGTGTGAGGAATTTAAAAAATAAGGGATTCAATAAAAACAGTGGCTCAATTCAATCGAAATTTGAAAATTATCGACGAGCTCGGGAAGCATGCGGTGTCACACTTCAACAGATTGTCTACAATTTCTTGCACAGAGTTGTCCCGTCGGGTTTTGGCGAGGGTTTCCGGCGTATCTTCTCCCCAGTTCTGAAGTCTGGCTCCCCAATAATGATTTAAACGAATTCTTCGATAATCGGCGTCTTCGGAATGTCCGTACATGACGTCGTGATGGTGAACACCAGCTATTCTTATATACTTGGTCTTGTAGATGGGTTTGACCAAATTGTTTGAAACGCCATGCGTCCTCCTTCGTAACCGGTCGATTAACAGAGGATGTTCTGCTTCGTCTAGTGGTTTTCCAAGGAATAAGAAATTTTGCATCGTAATTTGCGAAACATCCGGTTGTTCGTACGCGTAATTCGCGATAAATCGCTGCATGAAATTCGATTTCACATCTAGAGGGCAAAACGGGTATTCGTCGATGTCGATGCTTACTTGCCAAACAGACTTGTTGCCATAGTTATCGATACAATGCTGGTATGCACTTTCTTGTGTCCCTGCAACACTGTAAGGGAACGCTTTGTGACTCCAGTCGATGTAGCTGACAAAACCGCGCTTTATAAGAAAATCCAACGCCTGTTTTTGCGATTCGTTTTTAAAAACGTAAGAGTCGTAAACGTAGACGTGCTCGATGCCTGCGTAGCTAAGGTAATACAGCCATTGTACTAGTTCGCGGGTACTAAGTCGAGCTTTATCTGTGGCGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UH36	SRR1-like protein OS=Homo sapiens OX=9606 GN=SRRD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07985 all species →	SRR1	SRR1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040044 all species →	Family	SRR1-like protein	Interproscan
IPR012942 all species →	Domain	SRR1-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28626 all species →	SRR1-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_015061-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.