Gene detail

Detailed information of FUN_015112-T1 in Acropora pulchra

Genomic Location: ptg000009l:6442451...6464171
NR annotation: XP_044173766.1, huntingtin-interacting protein 1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_015112-T1

ATGGAACCTCTGACTGTTCCAACTACAGACCCCCTGTTGCAAAGCACTCCCCAGACTCCAGAGAGTGATATGTTAGGATTAGAGATAGCCGATGGGCCTACGTCTGAAGACAGAAACCTTCTCATCTACCAGCTAAGACAAGAAATTTTCCAGTTAAAGTTAGCTCTGGAAAAACAACAAAACGAAGCAAAATCTCTGGAAGACTCTCTTCGTTCTCAGATAGCAAGACTCACAGAAGAACTAAATGAGTACAAAGCAATTGCAGAGAAAACATGTGAGGAAAACGTCTTGCTTAGAACAGAAATTGAGAGCAAAGATGAAGACAAGAAAGATCAGAAGGGCTCGTCTGACGAGAAGTTCAACAAACTGAAAGGAATGTATGGAAAACTCAGAGAAGAGCACATCCAGCTTTTACGAACTAATGCTGATGTAAAGCAAAAACTAAGTGGCTCGGAAAGAGAAAAAGAAGAATTAAGTGAAGCGAATGAGAAGCTTCAACAGGAAGTGGACGATAAGGCAGCAGAGCTCTTGCAAGTCATTCAAAAAGCTGAATTGGAGTCCGAACAAGAAGGAAAGTTACTGACGCAAGAGTTGGAAGCTCTAAGGAAGGAAAAGACCGAAACAGACGAATCCAGAAAAGCAGTTGAAGAAAATTTAGAATCGACGAGGAAAGATTATGAAGAAAAGGTTTCATCTTTGGTGACGGAATTAGGAACGTTAAAGAAAGAAAAATCAGAATTAGAGCAAGCGCGGAGCACTACAGAGGAACAAATGGAATCCATGACGAAACAACACGAAGAAAAGATTGCATCTCTCAACAGCGATCTGAGCATTCTTGAGAAGAACAGAACAGACGAAGAGACAGCGAAACGAAAAGCAGAAGACGCCATTGAAAAGGAACGCAAGGAACATCAAGACAAGATAAGCGCACTGGAAACAGAGAGACTTGAAGAGCTCTCTAAAGAAAAACAAGACTTACTTGGAATGGCTCTACAAGAGGCGCAAAAGACGATACAAGATGCCTTGGACCAGTTTGCGAATCCAAAACACAACTCAACAACCTGTACTGCAGATTACTTGTTGAGCAGAATTGATGGTCTCCCACAAGTTGTCGACGAGCTCGAGTTCAAGTTCTCTTCCTATCGGCAAGACCACAAAGATGCATCTGCTTGTGTGCGCTGCGTGAGCTCATTCTCGCGTCATCTCGGTGAATGCATTCTGAATGCCAAGGCTACTTCACACATGGCACCAACACAAGAGGCGACAGGTCTTCAGTCACTCGGAGAATCCGCTGGCAAAGAATCCCTAGAGCTTCTGGAACTCTACAAACTAACCAACCCTGACCCGTCTGCTATTGCTGATAAAGTGAATGCTGTGAAAAAGCATATTAGTGATATTACCAAAGTGGCTGAGGCTCTTGTTCCCAAGGAGAAGGATAACCTGGACAGTGTAGGTGGTGAGGTCGAGGATGAGATAAATGCCACCGCTGAGCTTGTTGCGGATTCAGCTGCCAGAATCGAGGAAATGTTAAACAAAACAAGGGAAAAATTCACTGGCGTTCAGTTGGAGGTGAACGGAAGAATACTAGATTCCTGCACTGCGTTAATGGAGGCGATAAAGAATCTGATAATTAAGTCCAAGGTTTTACAAAAAGAGATAGTTGATGAAGGAAAGGGCCAAGCTACTGCAAAAGAGTTCTACAAAAGACATCACCGCTGGACTGAGGGGCTCATATCAGCTGCTAAAGCGGTTGGCTGGGGAGCCAAAGTGCTTGTCGACTCGGCTGATAAGGTTGTCCAAGGTGAAGGCAAGTTTGAGGAGATCGTTGTGGCATCCAATGAAATTACAGCAAGCACAGTTCAACTGGTAGCTGCATCGAGAGTGAAGGCTCATCGCGAAAGCAAGGGATTGTCGGCTTTGCAAGGCGCTTCTAAAAACGTTGTCGAGTCTGCAGCTGGCGTGGTCGCATCTACGAAGACTGGGGCCGAGATGATTGAAGACAGCAAATCAGTGCCGGATTACTCCAAGCTCACCCTTACACAGACAAAGAGACTTGAAATGGAGTCACAGGTACGAGTCCTTGAGCTTGAAAGTCAGCTCACGAAAGAGCGGCAAAAATTAGGACAGCTGAGGAAAGCGCACTATCAGCTGGCCGGAGTGGAAGAAGGACTTGGGGCTGCGTAA

Transcript

FUN_015112-T1

GGAAAATCTTGGAATTGGGTTTTTTTTTTTCATGTACAATTTGTGTATTATTTATGGTGAAGAAGCAGCCTGGTTCTGGGAGCAAAGTTGAAAAATACTATTTCCCTTAAGACGTTGATATTTACAGCTTGAAGCTTCAAAACAAATTGTTCCAAATGCAAAGTTAACACCAGTAGTCATTTGGGTGGGCATTTGTCGTACTCACAAGAGTGTTGTCTATCCACGATTTTTTTTTTGGGGGGGGGGGGTGGGTTTTGGTGGCTGATACCAATCATTTACCAAACCATAGACCTCTTTCATAATGGCGATCGAATTCAATTGTCTTTTGTCTCAATACTAATGAGTCTTTCTAAACACGCTGCCATGGGTAGCAAAGTGATGCAAGTAGGTCTAATTAACCTAAATATAAAGAGAATAACAAATAGGCCGCCATTTATGAAACTGGTCCAATGATATTGAAATCTATTTGAAATTCTTACGTTTGCCTCCAAACTCCCCTGACATATCATTTTTTTTTCTTTGCAGAATCCTCCATCGTTCACAGTTTCTGATCCTAAACCTGTTTTAGCAAGATCATCCAGCTTCGAGCGACCGCGTCGTCGAGCCGTTCCAGCTGAGGATCTCAAGCGACAAAGCCTTATGGAACCTCTGACTGTTCCAACTACAGACCCCCTGTTGCAAAGCACTCCCCAGACTCCAGAGAGTGATATGTTAGGATTAGAGATAGCCGATGGGCCTACGTCTGAAGACAGAAACCTTCTCATCTACCAGCTAAGACAAGAAATTTTCCAGTTAAAGTTAGCTCTGGAAAAACAACAAAACGAAGCAAAATCTCTGGAAGACTCTCTTCGTTCTCAGATAGCAAGACTCACAGAAGAACTAAATGAGTACAAAGCAATTGCAGAGAAAACATGTGAGGAAAACGTCTTGCTTAGAACAGAAATTGAGAGCAAAGATGAAGACAAGAAAGATCAGAAGGGCTCGTCTGACGAGAAGTTCAACAAACTGAAAGGAATGTATGGAAAACTCAGAGAAGAGCACATCCAGCTTTTACGAACTAATGCTGATGTAAAGCAAAAACTAAGTGGCTCGGAAAGAGAAAAAGAAGAATTAAGTGAAGCGAATGAGAAGCTTCAACAGGAAGTGGACGATAAGGCAGCAGAGCTCTTGCAAGTCATTCAAAAAGCTGAATTGGAGTCCGAACAAGAAGGAAAGTTACTGACGCAAGAGTTGGAAGCTCTAAGGAAGGAAAAGACCGAAACAGACGAATCCAGAAAAGCAGTTGAAGAAAATTTAGAATCGACGAGGAAAGATTATGAAGAAAAGGTTTCATCTTTGGTGACGGAATTAGGAACGTTAAAGAAAGAAAAATCAGAATTAGAGCAAGCGCGGAGCACTACAGAGGAACAAATGGAATCCATGACGAAACAACACGAAGAAAAGATTGCATCTCTCAACAGCGATCTGAGCATTCTTGAGAAGAACAGAACAGACGAAGAGACAGCGAAACGAAAAGCAGAAGACGCCATTGAAAAGGAACGCAAGGAACATCAAGACAAGATAAGCGCACTGGAAACAGAGAGACTTGAAGAGCTCTCTAAAGAAAAACAAGACTTACTTGGAATGGCTCTACAAGAGGCGCAAAAGACGATACAAGATGCCTTGGACCAGTTTGCGAATCCAAAACACAACTCAACAACCTGTACTGCAGATTACTTGTTGAGCAGAATTGATGGTCTCCCACAAGTTGTCGACGAGCTCGAGTTCAAGTTCTCTTCCTATCGGCAAGACCACAAAGATGCATCTGCTTGTGTGCGCTGCGTGAGCTCATTCTCGCGTCATCTCGGTGAATGCATTCTGAATGCCAAGGCTACTTCACACATGGCACCAACACAAGAGGCGACAGGTCTTCAGTCACTCGGAGAATCCGCTGGCAAAGAATCCCTAGAGCTTCTGGAACTCTACAAACTAACCAACCCTGACCCGTCTGCTATTGCTGATAAAGTGAATGCTGTGAAAAAGCATATTAGTGATATTACCAAAGTGGCTGAGGCTCTTGTTCCCAAGGAGAAGGATAACCTGGACAGTGTAGGTGGTGAGGTCGAGGATGAGATAAATGCCACCGCTGAGCTTGTTGCGGATTCAGCTGCCAGAATCGAGGAAATGTTAAACAAAACAAGGGAAAAATTCACTGGCGTTCAGTTGGAGGTGAACGGAAGAATACTAGATTCCTGCACTGCGTTAATGGAGGCGATAAAGAATCTGATAATTAAGTCCAAGGTTTTACAAAAAGAGATAGTTGATGAAGGAAAGGGCCAAGCTACTGCAAAAGAGTTCTACAAAAGACATCACCGCTGGACTGAGGGGCTCATATCAGCTGCTAAAGCGGTTGGCTGGGGAGCCAAAGTGCTTGTCGACTCGGCTGATAAGGTTGTCCAAGGTGAAGGCAAGTTTGAGGAGATCGTTGTGGCATCCAATGAAATTACAGCAAGCACAGTTCAACTGGTAGCTGCATCGAGAGTGAAGGCTCATCGCGAAAGCAAGGGATTGTCGGCTTTGCAAGGCGCTTCTAAAAACGTTGTCGAGTCTGCAGCTGGCGTGGTCGCATCTACGAAGACTGGGGCCGAGATGATTGAAGACAGCAAATCAGTGCCGGATTACTCCAAGCTCACCCTTACACAGACAAAGAGACTTGAAATGGAGTCACAGGTACGAGTCCTTGAGCTTGAAAGTCAGCTCACGAAAGAGCGGCAAAAATTAGGACAGCTGAGGAAAGCGCACTATCAGCTGGCCGGAGTGGAAGAAGGACTTGGGGCTGCGTAACTGAGCACGTCATATTCTTTGCACATTGTGTCCATATTTGCGATGCTGATGCGGTGGATTCCGTTTTAAGGTTGATTATGATTTGAATTCATGATCTCAAGATGAACGAGAGCAACTCGAACTAATTATAATCAAGTCCCCCTTGCTGATGCGACTGGAAACGTGCTGATGAGTAGCAAATGAATACTCACGATCAGAGTGACCGTTTCGTTTCATAGAAGTGAGGGTGTCATAGACAAAACCTTCTGTATCGTTGTACTCTTTCTTTAAAGATGCACGCTTACGCATGCGTTCATCATAAAGGAATGAACTACAAAGGAGGCTGGTAAAACTTTTACTCAGCCAACAGCTTAAGCCTTCACGATAAATGAAGGAAAGACTAACGCTCTAAGCGTCCGCAAATGTTGTCCGCAAAATAGTGATCGTTAGCGTCCACCGTCATTTTCGCGGGCCATTTTATCCACCTTCGTTCCCAGGGCTTTTGTGCCGAAGAGGTTCGCTCGTCCACTTTTCGACAGGAAAGCCCGAGGAGCGAGGCTGCTTTTTATCCGCTTAGGCTTGGCTCTAGTTATTGGAGAAGTATTGTTAGGACTAATCAGGAAAAAGACGCATCCAAAAACCGTGGGGAAGGTTTTCTAGGGAGGGACTCACACCGCTTCGACCTGTATGTATGAAGCGGCTGCCACGGTGATTGAAATAAATAAAGTTCGACCACCTAAGCTTTCGTATTGATTTGAAAATATCTTTTAAAAGGTGATAAATAATCTTTGAAACCAAGTAATATTAAATATTGCCAAGGAATTTGTTCCGAATTTTAACGAAGGCCAAAAACGATCTAATGTAATGCTATCTACAAGCGGGTATCTTAAAAAACAAAAGTTTGGTTTTCCGCTGCCGAACGTTTTTCTTTGCTCTGGCGAAGGGCGTAGGCTCATAACGTCACCTTGTGATCTTCTTACGGTGATAATTTGATCCTTACCAATTCGTTTGATACTAAAGTTTCGTGTCTCACTTTCCAACCGACACATCACCACAGTTTTTTTTAGAAAATTAACGCTTCACATACATTTCTATCAAAAGTAATTCTGATGAGCTTTGAAATAAACTGACGTTTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00291	Huntingtin-interacting protein 1 OS=Homo sapiens OX=9606 GN=HIP1 PE=1 SV=5
Q8VD75	Huntingtin-interacting protein 1 OS=Mus musculus OX=10090 GN=Hip1 PE=1 SV=2
Q9JKY5	Huntingtin-interacting protein 1-related protein OS=Mus musculus OX=10090 GN=Hip1r PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003863 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01608 all species →	I_LWEQ	I/LWEQ domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002558 all species →	Domain	I/LWEQ domain	Interproscan
IPR035964 all species →	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR030224 all species →	Family	Sla2 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10407 all species →	HUNTINGTIN INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0006919 all species →	Biological Process	obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0030479 all species →	Cellular Component	actin cortical patch	Interproscan
GO:0032051 all species →	Molecular Function	clathrin light chain binding	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0043325 all species →	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04559	HIP1; huntingtin interacting protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora pulchra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora pulchra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →