Gene detail

Detailed information of FUN_015193-T1 in Siderastrea siderea

Genomic Location: contig_12:8120160...8144652
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_015193-T1

ATGATGAATGGGGCTTTGGTTCATTCTTCTGAACTTCACATTCTCGAACACAAACTACGGGTTTCGAACCTAAAGAAGGACGCGATCTCCTTATACACTCACGCGCTTATAAAAATTTCATTACTACCTCGATCAagGCCAAGATTTTTCAGCTTCACAGAGACCAGGGATGGATATACAATTATTGTGGAGGACGACCTTTGTAAAGAGCTTCCTCAAAGTGACAGTATTGACATGCCTGATCTTGTCTGGAAGGTGCTGTCTGTTTCTGCTGGAGCTTATGGGAGTCATCAACTGACTGGTATTAGTAAAATTGTTAAGACAGTCATCACGCCTTTAGCAGACTTTAAAGTGTCAGTTCTGGTGATCTCAACATATCAGTCGGATTATGTCTTGGTTAAAGAGGTTGACCTTGACACTGCAATTAAATGCTTGGCTCAAAACTACAAGATCTTTAAAGACAGTGGTTCAGGTTTGGAACCTGTTACCTTGTCAATTGCTGATAGAATGGCTGGAATGAcaaaaatgaatgaaagaaaagcAGATGAACACAGACCAATTGTTCACCCTTTCACCTGTCCAAAGAACAGATTTCACGTAACAAGTCTTGATTGCCAAATGTTACCAAGCCTAACCTCTACTATCCTTGATCTGATGTTTTATTCTAAGTCACCAGCTGCAAAGGGCTATGAGCCATTCTTCCATATTTCCATTGTTGAGGGAGACATCTCCTTAGTGCTGGACAGTGAGGCTTTGTCAAGATTTCCTGAAGGCTCTCTTTACACAAACACCAATGATGAGGGATGGAAAATGATCCGTGTTGGAGATGCTCCTCTTGGATTTGATGAAACTGGCGTAGCTGCCCAGATTGCAGAACCTTTAGCAGATGTGCAAATGTCTACTTATTACATCAGTACTTATGGCCTTGGTCATACACTGGTGCCTGAAAGTGAAGTTGAGAAGGCCACAGAGCTACTCAGTTCTTTACAATCTAAACAAGTTAACTACAGATGTCATCGATCAGATGGTTCAGCCTCAGCAGCAGAACCTGAGGACACTGGTTTTGCCAACATGGCGGACGACTTCGAGGGGAGAAGCAACAGTGGATGGTCTGGCGGATTCTACGATAATTTCGGCGATGCACCAAGGGATTATGGCGGGTCATACGGCGGTGGAAGACGGCGTGGTGGAGGTGGCGGTGGGGGTGATCGTGGGTATCGCGATCGTGGTCCTAAACCGTTTCCAACAGAACCACCTTTTACTGCATTTGTAGGCGGACTACCTCCGGACACAGTCCAGGGAGACCTGGATGCGATCTTCACAGATATTAAGGATAACATCAGAAGCATTCGTCTGGTTAGAGACAAGGAAACAGATAAATTTAAAGGATTCTGTTATGTTGAATTTGAAGAGGCTGATTCACTCAGAGAAGCACTAAATTATGATGGTGCATTAATTGGAAAGCAGGGAAGAACACTAAGAGTCGATGTAGCTGAAGGCAAACGAGAAGGTGGCCGCGGAGGTGGCAGGGGTGGAGGAAGAGGCCGAGGAGGGCATTCTCAAGGTGGATATGGTGATAGAGAAGGAAGATATGGAGGCCAAGGAGGTGGAAACTGGGGCAACAGAGGAGGAAGTGGTGGAAGTTGGggcagtggtggtggtggtggtggtggaagcTGGGGTGGCCGTGAAGATGGTTGGGGTGGCAGAGATGAAGGAGGAAGAAGAGGGGGACGGTatggaggtggaggtggaggtggaggtaGAGGTGGATATGGAGGAGGTGAGAGAAGAGGTCCACCACGACAAGAGGAGTTCAAAGAGCCTTCAGCAGAGGAACTAAAGGCCAGACCAAAATTAAAACTTCAGCCACGTACAGTAAAAGATCCTGTAAATGAAGTGGCATCCAGCGTTCAACAGATGGCAATATTTGGTGGAGCTAAACCCAGAGATGAAAATGAATATGTTAAGTCAAAAGACAGAGCAGACAGCCAGTCAAGTCAAGGCAGTACATAA

Transcript

FUN_015193-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21389 all species →	CASTOR1_ACT-like	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Domain	Interproscan
PF18700 all species →	Castor1_N	Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF13840 all species →	ACT_7	ACT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR045865 all species →	Homologous_superfamily	ACT-like domain	Interproscan
IPR049479 all species →	Domain	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Interproscan
IPR051719 all species →	Family	Cytosolic arginine sensor for mTORC1	Interproscan
IPR040778 all species →	Domain	CASTOR1, N-terminal	Interproscan
IPR026249 all species →	Family	CASTOR family	Interproscan
IPR034229 all species →	Domain	eIF4H, RNA recognition motif	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR027795 all species →	Domain	CASTOR, ACT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31131 all species →	CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_015193-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.