Gene detail

Detailed information of FUN_015225-T1 in Colpophyllia natans

Genomic Location: contig_24:65507...69237
NR annotation: XP_020622919.1, uncharacterized protein LOC110060475 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q96MS0	Roundabout homolog 3 OS=Homo sapiens OX=9606 GN=ROBO3 PE=1 SV=2
Q9Z2I4	Roundabout homolog 3 OS=Mus musculus OX=10090 GN=Robo3 PE=1 SV=3
O94779	Contactin-5 OS=Homo sapiens OX=9606 GN=CNTN5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-