Gene detail

Detailed information of FUN_015226-T1 in Dendrogyra cylindrus

Genomic Location: contig_24:286713...303486
NR annotation: KAJ7393878.1, regulation of response to stimulus [Desmophyllum pertusum]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_015226-T1

ATGTCTCAATTCACAGTGGCAAATAATAATCGCGATGATGAAGGTACTGCAGTTCGCCTTGTTGGAGGTGTGGCAAACCATTTGGGCCGAGTAGAAATCCTTTACAGTGGAGAATGGGGCACAGTTTGCGATAACCGCTGGACTATCAATGACGGTCACGTGGTATGTCGAATGTTGGGCTTCTCAAAAGCCGTCCAGATATTTAAATCTTCGGCATTTAAGGGTGGCAGTGGCAAAATATGGCTGACCAAACTTGTTTGTAATGGAACTGAGAACTCGCTGTTTAATTGTAAAAACGCCGTTAAGTTTCTTGGAAATACCGGATGTACTCACGAGCAGGATGCAGGGGTGGAGTGTTTAAAAGATGATGATAAAACTGGCAGTTGTTCAACGCGGACACTAACCCAAGAAGGTTCGTTCCATTCCCCCAATTATCCAAGAAATTATCCCACGGACGCTGTATGTTACTGGATAATAAAAATTCCGCAGGAAATGAAGGACCTCGTGCAATTTATCAAGCTCACATTTGAAGCATTCCAACTGGAGTACGgctcttcttgtgcttatgacCAACTGACGGTCTTTGATGGCGAAGAGGGAAACAAGACAATGCTGGGAAGGTTTTGTGGCGTCGACATTCCTCCTCCGTTATTCTCAAGCAGCGATCAGATGGTTGTTAAGTTTACCAGCGATTCTTCGATGGCCCAGAGAGGTTTCAATGCAACATTTGAGTTTACGAATGTATTAGTGCCTGCCGATATCCTGCTCATCACCTCTGAACAGTCAGTAGTGTTAGGTGCAGACGTCAAACTCGACTGCTGGTCAAAAGGAGTTCCCACCCCTGATGTAGCATGGATGAGAAATGGAACAGTGTTGGTCAAGGGCGAGAGAACGGCGATCCTGAAACTCAACAACGTAACATGGCAAGATGAAGATGTATACACTTGTGTAGCTAACAATTCAGGAGGAAGTGACATAGGAGAGGCCAACGTTGATGTTGTAGAATGTCCATCGTCATGCAGCTGTTTTTCTGCAACCGATGAATTAAGAATTGATTGCAAGTCTTCAAACATCACCTCCGTGCCATTAACTATCCCGACGAGCGTGACAGAAATAGACATGTCAGATAACAGGATAACAAGTTTGACTACTCAAGACTTGAAGTCCTTAAAAAAACTTCAAAAATTGTATTTATCAAACAATGACATTAAGCGACTGAGAAACGGAACATTTCAGGACACTGGTGACTTGGAAGAAATATTTTTGGCCCGCAACGAGATCGATGTACTAGAAGAAGGATCATTCACTGGCCTGGAATATTCCCTTGTCATTTTGTTCTTGAGTAACAACGACATTGTTACAGTGGATTCATTGACCTTTATGGGCCTTACatctttaatgttgattaaTCTTGCAGACAATCCTATTACGACACTTCAGAAGAAGGCTTTTTCTATTAATGACACAAAACTTCAGACAATCTATCTGATGAACACGAAGTTCGAAAAACTGAATCTGAGAGCATTTGATGGTCACAAGAACGTTAAGACGTACATTTCACCTGATAACGTGGATGACGGCATAGTCACAAACCAAAAGGGTCTCTTTATCGCTCTTACCGAAGCAGGGTTTGCAGCCGGGAACGAATCATACAGATCTCCTTGCCCCACGGGAACATTTGTTCCTCATCTTGAAAACTTCAAGTACAACACAGCTTTGGAGGCGGAATGCATTCCGTGCCCACCGGGTGGTTTCTATTCGGACAGTGTCGCTCATGTTGATGACAGGTGCTTTTTGTGTAATCCGGGAACTTATGTTCCACCTGAGAGAGCACCAGGGAAGAGAGTGCTGGACTGTCACGTGTGTCCTACAGGGACCAGAACAAACCTTGATTCTGGTTACCGAGCTTGCAAGTGCATCGAAGGATTTCACCGCCAAAATCGCTTTGGCGCCTGTAAAAGTTGTCCCTCTAAAGGTCTCGACTGTGTCAATGAATCCGTTTCGCTGAAGAAGGGATACTACTGGCAGTGGGACTCAGAAGAAAGCATGCTTGCCTATAAAGATTTCGCGGATAATTTAAAAATCGAAAATAACTCTTACTTTAGGAATACGTCCAACTACAATGGAACTCTTCCCCGGCCCTACCAGTGTCCGCGCGTGGAATCATGCGAAGGAGGATTGGAATCTAAATGTGCCAAAGGTTACTCAGGCCCtctctgcgaggtttgcgaaaGTGGATATTATAAACGAGTTCTTTCCTGTAAAGCTTGTCCGTCGGGTACTTGGGTCATCGTGCAGCTTTGCGTTTTAGGCCTGGTAGTTCTCGTTCTCATTGCTATATTGATATGGAATGGGAGGAGAAAGAAAACCAAACGAAAGCGACCTATGATTGACATCCTCTTGGCCAGGCTAAAGATTGTCATTGGCTTTTATCAAGTTACATCCGGGATAGTTGAAGCGTTTGTTTATGTCAAGTGGCCTTCCTCCTTGTCTATGATCGGTGATTACGCTGAAGTTATCCAGCTCAATATTCTACAGTTTGTACCACTTCATTGCCTCTTTCCATCTTGGAAGCAAGATGCGTTTAGCAACATGTACGTCATCGTAGGCAGTAATGCTTGCGTTATAATATTCGCATTCGTTGCTTATTGGATAAGAAAACTTTTCCTTGTCCGGAAACTCAATAAGAATTCCCCTGAAATGAGGAATAAGTTATCTACGACAAAAGAGTTCTTATATCGCAACgtgtttttatttctctttatAACTTACCCAAGTACATGCTCGACAATTTTGAGAACTCTTCCACTTGCATGTCACGAACTCTGCACGGAAAACTCCTGCAGGTTTTACCTGAAGGCCGATTACGGCGTAAAGTGTGAAGGAGGAACCTACGAGTTCTTTAAGCTGTTTGCCTTCGCGGCTTCGTCTTACATCGTTTTGCTTCCAGCCCTGGTGTTTGTGGTTTTGTGGAGGCGCAGAAGGCAACAGCTTTCGTCATCTcatcaagatgaagacagggtTATTTCCAATATGGTCGACCCTGAATTTGGTATGTATGCTGACACTGCAGAAGTTGCGGAAGAAAATGACGAAGAAGACCATGACATCGATGAGGGGCCTAATGGCGAATCAGAACTCATTTCTGGAATGAGCTTCCTTTACGAGAACTATAAGGATGACGCGTGGTACTGGGAGCTAGTGGAAGTGGTTAGGAAGCTCGTGTTGACTTGTGGGATTATTCTAATTGGTCGTGAGAGCAGAGCTTACGTGGGCCTGGCCTCTATCTGTTCTGGACTGTTCGCTATTGCTTACGCTTTCCGTAAACCCATCAAAGATGAGTTTGAAGATAAACTACAACTAACAGCTCTTCTTGTGATATTTCTTAATCTTGGCATTGGAGTTATTTTGAAGATCCCTAAAGAATCTGTACCGTCAGATGTGGATGAACATGTAGATTCATTGCTGGTTAATATTCTTGTCGTTGGGGCAAATGTATTGGTCATTTTGCTAGTCGTGGGTCGTTACCTCGCTGTGTTGATACACAATTTTCTTCTGTGGCGAAGAAACCCCCAGTGCTCCGCTTCCTGCTGTATTACCATGCTTCTCTCCTTGAACGAGTTAGGCAGCGGTGTGAATTCAGTGGCGGCTGGAGGGAAGTCGTCCCTCAAGGTACACATGGGTATAGGACGCGTGGACATGCCTTCAATGCGAGCAGCTGTCAGTGATAATGTTGGCTTTGAAATAGAAGAAAACGGGAACGACGTGACGAAGGAAAAGAATAAAGAAAAGATTTTAAAGGCTGTTAGGTTTATGTCGAGGAATGAACATAGTAATGAAATGGATATCAAGAACAGAGCAGGAAGCACAGGTTCTGATGGACGCCGTTTCAGTCGCTTCCCGACTATCCGATCAGGAACTCTGGATTCTTAA

Transcript

FUN_015226-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60997	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Mus musculus OX=10090 GN=Dmbt1 PE=1 SV=2
Q95218	Scavenger receptor cysteine-rich domain-containing protein DMBT1 OS=Oryctolagus cuniculus OX=9986 GN=Dmbt1 PE=1 SV=2
Q8BZE1	Putative DMBT1-like protein OS=Mus musculus OX=10090 GN=Cdcp3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR000372 all species →	Domain	Leucine-rich repeat N-terminal domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR050467 all species →	Family	Leucine-rich repeat and fibronectin type-III domain-containing	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45842 all species →	SYNAPTIC ADHESION-LIKE MOLECULE SALM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_015226-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.