Gene detail

Detailed information of FUN_015344-T1 in Acropora pulchra

Genomic Location: ptg000009l:9058186...9063627
NR annotation: XP_015748370.1, PREDICTED: vacuolar protein sorting-associated protein 28 homolog [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T178	Vacuolar protein sorting-associated protein 28 homolog OS=Bos taurus OX=9913 GN=VPS28 PE=2 SV=1
Q9D1C8	Vacuolar protein sorting-associated protein 28 homolog OS=Mus musculus OX=10090 GN=Vps28 PE=1 SV=1
B5DEN9	Vacuolar protein sorting-associated protein 28 homolog OS=Rattus norvegicus OX=10116 GN=Vps28 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007231 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03997 all species →	VPS28	VPS28 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037206 all species →	Homologous_superfamily	VPS28, C-terminal domain superfamily	Interproscan
IPR038358 all species →	Homologous_superfamily	VPS28, N-terminal domain superfamily	Interproscan
IPR007143 all species →	Family	Vacuolar protein sorting-associated Vps28	Interproscan
IPR017899 all species →	Domain	Vacuolar protein sorting-associated, VPS28, C-terminal	Interproscan
IPR037202 all species →	Homologous_superfamily	ESCRT assembly domain	Interproscan
IPR017898 all species →	Domain	Vacuolar protein sorting-associated, VPS28, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12937 all species →	VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000813 all species →	Cellular Component	ESCRT I complex	Interproscan
GO:0032509 all species →	Biological Process	endosome transport via multivesicular body sorting pathway	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0044877 all species →	Molecular Function	protein-containing complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12184	VPS28; ESCRT-I complex subunit VPS28	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.