Detailed information of FUN_015468-T1 in Siderastrea siderea

Genomic Location: contig_12:11152620...11159373
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01730
all species →		UreFUreFFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002639
all species →		FamilyUrease accessory protein UreFInterproscan
IPR038277
all species →		Homologous_superfamilyUreF domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR33620
all species →		UREASE ACCESSORY PROTEIN FInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006807
all species →		Biological Processobsolete nitrogen compound metabolic processInterproscan
GO:0016151
all species →		Molecular Functionnickel cation bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_015468-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015468-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
63TPM > 0
7Conditions
2,853.0Max TPM
364.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 321.22 1,142.95
holobiont · low.pH Control.temp 20 13 523.96 2,853.01
holobiont · control.pH_high.temp 20 14 288.54 919.49
holobiont · control.pH Control.temp 19 17 430.53 1,981.31
Whole organism 4 4 14.16 16.29
unannotated 1 1 17.80 17.80
live coral tissue/skeleton 1 1 15.82 15.82

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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