Detailed information of FUN_015508-T1 in Siderastrea siderea

Genomic Location: contig_12:11678941...11692316
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_015508-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR042378
all species →		FamilyIntegral membrane protein DGCR2/IDDInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15256
all species →		INTEGRAL MEMBRANE PROTEIN DGCR2/IDDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_015508-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015508-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
45TPM > 0
7Conditions
169.0Max TPM
28.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 5 10.40 69.45
holobiont · low.pH Control.temp 20 10 37.30 158.68
holobiont · control.pH_high.temp 20 9 22.69 124.21
holobiont · control.pH Control.temp 19 15 52.08 169.04
Whole organism 4 4 2.89 3.16
unannotated 1 1 1.90 1.90
live coral tissue/skeleton 1 1 4.79 4.79

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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