Detailed information of FUN_015530-T1 in Siderastrea siderea

Genomic Location: contig_12:11934499...11941964
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007803 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14916
all species →		CCDC92Coiled-coil domain of unknown functionCoiled-coilInterproscan
PF14917
all species →		CCDC74_CCoiled coil protein 74, C terminalCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040370
all species →		FamilyCoiled-coil domain-containing protein 74A/74B/92Interproscan
IPR039496
all species →		DomainCCDC92/74, N-terminalInterproscan
IPR029422
all species →		DomainCoiled coil protein 74, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14882
all species →		COILED-COIL DOMAIN-CONTAINING 74AInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for FUN_015530-T1 in Siderastrea siderea.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_015530-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015530-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
100.5Max TPM
4.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 64.59 100.48
unannotated 1 1 66.30 66.30
live coral tissue/skeleton 1 1 68.80 68.80

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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