Gene detail

Detailed information of FUN_015549-T1 in Dendrogyra cylindrus

Genomic Location: contig_24:5189397...5198738
NR annotation: XP_020609709.1, probable LRR receptor-like serine/threonine-protein kinase At2g28960 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_015549-T1

ACATCCAGGCCGCGAGCTCGAGGAAAATAGGGAGAGTGGCTCAGGGGACCTGGAAATGAGAAGAGACTGAAATGTTTTTAACAACAAAGCACAACATCTTCCACGGAAGGGCTTCCGCTTTATAAGAATGATCGGAAATTTCAGTCGGCAAAAATGTATCGGAAGTGGTAGTTTTGGCAACGTTTACAAAGAGAAGTGGAACGGTCGACCGGTTGCAGTGAAAGAACTCCATGAGTACCTTTTTGAACCTCACGATCCAAACGGATATGTTGCTTCGTTTGAAGCAGAATGCAGAATTCTACAACGACTCCAACACAAGAACGTTGTTCAACTGCTGGAATTCATTATCTCACATTCGTCTCCTCCAGTACTCATTACCGAACTTTTAGATTGCGACCTAGGGAGCTATATTGGTTTATTTCATCCTGACAAGATTCCATTTCCAGAGACAGTCTCGATCATGTCAGATGTAGCCGAAGGGCTTGCTTATCTTCACGGACGCAATCCGCCAATAGTTCATAGAGATTTAGCCTGTAAAAACGTGCTCTTGACCAAGCAAAGGCAAGCTAAGATTGCTGATCTCGGTCTTGCTAAAGTGTTTccacgaaataaaagaaaacagttCGCGTCTCCAGAACCAGGAACACCGGCGTATGCCGCGCCAGAAACGTATTACCGTGATGCATATGGTAATGCTCCTTCCCCTAAAGTCGAATACGGCGTCGAAATTGATATTTTTTCCTTTGGAATTATGTTGATGGAGGTCATCAATGGCAGTCGTCCAATCGTGGAAACAGAACGACCCTTTACAACTGACGGCCAACGAATTCCAGAAAAGGAGCGTCGTAGAAGTGACATAGAAAAGATGGGTGGTCATAAGCTGAGGGAAATTGTACTTCAATGTATTGAAGATTCCAGTGAGGAAAGACCAAGCGCTGAAGAGGTCTCCGTGTGGCTTGAAAATGAATGGTCAAAGACTCAACAGAAACGACATATTGCCAAGAACGCGAAAGGTCCTAAACTAAAAATTGCTGTCCTTGGTCAAAGCTACGTAGGAAAAACGTCCCTAATTTCACGCTATGTTGAGAATAACTTCAAATTAAACGTGGAAGCGACGTGTGGTCCTCACCCGTATCTTACACGAATCACTCTCCACGACAAAGAGTACTGCTTGCAAATTGAAGACACTGCAGGGCAGGAAAGATTTCGTAGCATAACTCCAAATTCAATACGAAACTGTCAAGGGGTTGTGCTGGTTTTTGACGTAACGAATCGGTCTTCCCTCTTTGTTGGCATTCCTCAAATGTTAGAGTTGGTTAAAGCCCACGCACCAGATAGCACCAGCTTGATTTTAGTGGGGAATAAAGCAGATTTGGCTGATCAAGATGCCCAGCAGATTAAACGTGAAATTACTAAGGAGGAAGCAGAACATCTTGCACAGAGACTTGAAGCTCGTTATGTCGAGACTAGTGCATTATCTGGacaaaatatcgaagcagtgtTCGAACTGATTGCAAACGATATTTATGACACCCTGGACTTGTCTGATATTGATATTTATGTCCCCGGCGCCGGTAGAGATCGTATTAAGGTAACCAATGTGGATCCTCCACGCAATAGAAACTTCATTGAAAAGATTGGTGACTGTTTTCAAAGCATTAAGTCCTGGTGGTCCAGCAACACAAATTAACAACTGCAACGACCGCCTGCCACCAGGCCACAGAACAGAAGCAGCTACAGCATCAGTTACCCGCCACACCATCGTGAAGGGCGATATTCCTGTCTAACAAAGAACCTTTTTACGTTTGATCGTTTTAATGTTATTGATAGACTAGACTCACCAGAAACTAGACTACCTTTGCGGTCTTAATTTTACAACTTCTTGAAGGAAATTGTTCGAGAACTTGTTTTTTATGGTAATATCAAGTTTCACTCACAACCCAGCAGATGGAAAACGATTTTACTGAATTACGTAAAACCTGTTGGTAGCAAGTTTATTTTATGCTGTGATTTTGATGTAAAAATCTTCCCTATGAAACTTCCAACTTTTAATGAAGAATGTCTAGAATACTTCGCAGAATTTTGATTGGCAGCAAGGGAAGATAGTGTAAACAACCTCACAGGTGGTGATCTTTCAAAAATTGTTCTATAGAACAATAAAGCTATTTGTATATAATCACAGACTTGCAGATAAAGGCATACTTAGATTAGGAGACCTTATTTCTGAAAATTACGAGCTTATTACAAACACAAGATGCGGGAATGAGATATCTCTCCGCTAGATGCGTTTGAACTGTTTTGTGTAGTTGAAGCCCTTCCAACAGAACATCGTAAATTTCTAAGAACTTATAATTAATTATACTGATATCGAACCCTTTTACGTACAAAATCAGGTCCAGCTATAGTTAAAGGGCGAAATCAGTCTTAATTAGCAAAGCTGTTTCGAAGACTATTTACAAAGAGTTCCGAAACAGAATCATTGCTCCACCTACAGCCAAACTCAAATACAATGTTTTGTTCGAAAATGATGACGAATTGGATTGgaagaaaatatattgcttACCATATCGTGTTGCTTCGGACACAAAATCACGTGAATTTCAATATAAACCGTCTTGCAACAAACGTCCTCCTTAGCAGAGTTGGAATAATTTCATCCCCAACCTGTTCTTTTTGCGGGGAAGTAGACGAATCTCTCAAACATATCTTTCCAACTTGCCACTACACCAAGACGTTTTGGGGAGAAGTTATAACATGGATGGGCCACCAGAATATCCAAATTCAGCCCCTCTCTCATAAAGATACAATGTTTGACAAAACCAACGAAGAAGATTTGTTTGTTAACCACATTTtgttaattgcaaaaaaataaatatattcatgtagaaaagaaaatttatcaACTCAAGACTAGGATTGCGAAATCTAATAATAAATGGCCCATCATCGAAGAAAATGGGGAAAATATTTTGAAGTGGAAGCATAATATGGTAAAATTCATGTAAGTTATAGTTTATAGTATTGTAATTTAGAATACGAACAATGGAAGTGTAACGGGTTTCCTGTACGTGTAATGTGCGTGTGTTTGCATTTGAAGGCGTTCGTAAACATGTACTGTGAGAaaccacagggagaccacaatatttg

Protein

Uniprot

Uniprot term	Description
P17608	GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ryh1 PE=1 SV=1
O42819	Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=SEC4 PE=3 SV=1
P07560	Ras-related protein SEC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SEC4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR051681	Family	Serine/Threonine Kinases and Pseudokinases	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44329	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan