Gene detail

Detailed information of FUN_015559-T1 in Dendrogyra cylindrus

Genomic Location: contig_24:5364108...5418163
NR annotation: XP_020609701.1, uncharacterized protein LOC110048250 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_015559-T1

ACGCAACGGTTCCGCTTTACAGAATTTCACCTCTAGCAGTAAGAAGCTGCCTGAAATTACGACAAAACGGAATTGTGCCAGTGCCAATCGTCGTATCCACTCCAGAAGCATATTTTTAAGAAAGAAAACCAGCGACACCAACCACCAGCATTATGGCGAGACAGGTACCGGAATGGAAATATGGAACTGAAGTCATCGTATTGAATAAATATACTGGCGGGAAACCAAGGAGGTTACCGGTGAGTTTGTCATATCGATTGTTTAAAGCATTTGACGGCTCGGCAACTGGATTCAAGAAATTTGTGACGTTACCGGAACTGTCATTTGAGAAGGATGAGGTGCTGTTTTTTGAAACACATGGGGATGAATCTTGGTTCTTGGCAAGGAATGGTAAAGAACAGAAAGGATGGGTTTCATATAACTATGTTCAGAAACCGTTGACTGTTGTTCTTCTCGGAAAAACTGGAAATGGAAAGAGCGCCACCGGTAACCAAATAATCGGAGGAATGGAAGAGTACTTTGGGGTCAGTGATAGTGCACAGTCTGTTACAGACAAATGTGAGAAAAAAGTTGGTACCGTGAAGGGCAGAAGTTTTATGGTGATAGACACCCCGGGTATTTTAGACACAAATGTTGTAAAAAAGATGAGTGGTTTGAGATCCTGGTTGCCTGCGTACAGAGACGATCAAGAAAGAATCTTAAAAGAATTAGCCAATATGTACACAATGGCTTCGAACGGTTTCGACGCCATCATTCTGGTCGCTAAGTTTGGCGCGCGATTTACTGCCGAGGACGCGGAAGCACTGAAGTTACTCAAAGCGTTTATGGGCGTAGAATCTGAAGGTCACATGATCCTAATACTCACACGTGGTGACGAAGCTGAACGCAATGCAAAGAGGAAAAAAGTCCTTCCGGTCGACAGGTACGTGAAACAATGGATTGGCGGAATGCCAGTTTGGGTGCAAGATTTCATCCACCGTATTGGAGACCGGATAGTCTTGTTCAACAACTTGCTGGAAGCCGACACAAACTCGGAGGCTTATCACCGACAGATAAAAACTCTGACAGAGGTGATAGACAAGATGGCTAACGGAAAGCCATTTGTCAATTCCACGATACACGAGGTAGAGGCAATGAATGCCAGGATCGAAGAGGCGTTAAATGCCACCGGGTATGCGCGTGATTTAGAAACACTGAGGAAGAAAATAGAAGAGATTGATACACAGCTAAAAGAACCTAACCTTAGCGTCACAGAGAAGAAGGAGCTCGAAGAGGCTAGGGACGAGATCCAGAAAGAAGTTGATGAAATAGAGAGAAAAAACCAGGAAATGCGAAGACAGATTCAGgcggaagaaaagaaaaaggtgGAAACCAAGGTGAAAGAAGAAGGAGGATGTTATCCCGGGACAGCAACCTTTGTTGACAAGCATGGCCGTAGACGAAAAATGGCTTCTTTACAAATTGGCGAAGAGGTGCAGGTCGTCAACAACAACGAGATCCGAACAGAACCAGTGATCACTTTCATCCACCGTCAACCAGAAGTTGTGGAAGAGTTCATCAAGATCACAACAATGAAGAATAACGTCCTGAAGATCACCGAAGACCATCTGCTGTTTGTTGAGAAGATGGGACAAGCAGCAGCCATTCCTGCCAGAGGTGCTAAAGTCGGAGACACAGTGTACGTGAGAGGGAAGCATAGTGTAGTGAAAGATGAAATTCAGAGCATCAGCATTGTCTACGAGAAAGGTGTTTACGCCCCGGTGACCCTCAGTGGTACCATTCTGGTAAACGATGTGCACACCTCGTGTTACTTTGATGTGCTGTCTCATGAGTGGTCCCACAGGGCCATGGGTCTTGCTCGCGCCGTGCACTATGTTTCCCCTTGGATGCTGCAGTGGATCAGTGGTGTTGGACAGAAGGATGGATTCCCAGGCTGGTGCAGACTGGCTCATAACATGCTCACTTTGCTGGACTGAACTGAATGACTCAATAATTACCGATTTCTCATTCTTATTCTATTTGTCTGAACTGATTTCATAGCTTAGTTttggttttagttttctttatgTACCTAGCTAGTCTCCTTCGAATGGGAATTTTGCCCGTATAGCACCGGGCGAATTAAAAAGCAGAGGAAGGTATTATATTATGTACTAAATGTTAATGGTACATTGGATTAATTTCTTCATTTAATTGCTCAGTACTATTACTGGTATTAGTCTTAGACTTGCATGATTATACTTGTGCATGCGACGCTTAGAACTTTGTAGTTAGTTAGCACGTCACAGAACTTTGTGGTTAGTCAGTGTGACAAAAGACTGTAGTTAATAAGATGTTAGTGTAGTTAATAAGATGTTAGTGTGACACTGAACtttgtagttagttagttagtgtGACATAGAAATTTGTAGTTAGTTAGTGTGACATGGCACTTTGTGGCTAGTAAGCGTGACAGAGAACTTTGTAGTTAGTTTGACATAGAACTTTGTAGTTAGTCAGTGTGACATTGAACTTTGTGATTAGATAATGCGACAAAGAACTTTGTAGTTAGTTAGCGTGACATAGAACTTTGTAGTTAGTTACGGAGACAAAGTTTTGTAGTTAGTCGGTGTGACAAAATTTTTTGTAGTTAGCGTGACAAAAAACGTTTGGTTAGCTGTGACAAAGAACTTTGTAGTTAGTTACCGTGGCAAAGAGCTCTGTAGTTAGTTTATAGCGTGACAAAGAACTTTTCAGTTAGTTAGCGTGAGAAAGGACTTTGTAGTTAGTTAGTGAGATATAGAACTTTGTAGTTAGTTAGTGAGATATAAAACTTTGTAGTTAGTTAGTGAGATATAGAACTTTGTAGTTTGTAAGTTAGTGTGACATATAGGGAGGACCCCTATATGAAACGGACGGGTTTGCTCGTCGCACCTTTTACAGTTTTAGCGGCAAAAGACTAATTTTGGTAATACAAAGTGTTTTCAGCCCCAATGCCCCCATTCGTAGTTATCACGATACCTTTCTATGGCATTTATCTAGCTTAAATAGTGCAGGGACGCCAAATTGCTTAGATTTTTTAAGGGAAAATTAAACTTGTACGAGTAAAAGGCTTACCTTGTAAGGGTACAAATAAATttgtgccacgcccatttggcGACATTCTGGTACTTTTAACGAATTTCTTTGAAAACTTTTCACGAGCATGCCCGTTTGCTTATGTGACAAATCGAAGAATGCTGTTTTTGATCTTAAACCTtggccaaacggtaacgcaGGTAGTGGCAAGTTGAACGTGCGTACAGACTTGCGTTGGCTGGCCAAACGGACTCACAGGTCTACTACCAAGTGCACGCAAGCTGTCAAAAAAGCATTTAAATGCTACTGTGAGCGCAGTAATTCTGTACTTGAAGTAAACTTGCGTTGACGTTGGGTGGtcaaacggtgaaaaacttgcgttgacttgcgtgaaAATTTGATatcgaccaaagtgaacgcaagtcAATGCAAGTGTACGCAGTTCCTGGTTGAACGGAGACGCAAAGAGACGCAACGTTTAAACTTATGTCTCCATTTGGCCAGGCCTTTAGGTTGCGATTTATACACGGACACTGTAAACAACAAGAAATGATAACTGCGCATGAAGTACCATTGTTAATCGATATGATTGACTTATCGATTAGACCCAATTTGTTAGGCTGGTAAATTAAAAGTACTGAACGGGAACCGGTCTAGAGTCGGTCTACGGGCACAATTCGCGGAAGTTCAATTACAAATGCTATCGCATATAACATTAACCAATTGTCCGATATAAACGCAGCCTAAGGGAATTGTAGCTTTAGTGTTGTTTTCCCATTGTAGGGTTACTATATATTCATCGATTTAATTTTTGTCAGGTATAAGGTGACCAACTTGATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99JY3	GTPase IMAP family member 4 OS=Mus musculus OX=10090 GN=Gimap4 PE=1 SV=2
Q9C8U6	Immune-associated nucleotide-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=IAN3 PE=3 SV=1
F4HT21	Immune-associated nucleotide-binding protein 9 OS=Arabidopsis thaliana OX=3702 GN=IAN9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001280 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01079 all species →	Hint	Hint module	Family	Interproscan
PF04548 all species →	AIG1	AIG1 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006703 all species →	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001767 all species →	Domain	Hedgehog protein, Hint domain	Interproscan
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan
IPR001657 all species →	Family	Hedgehog protein	Interproscan
IPR003586 all species →	Domain	Hint domain C-terminal	Interproscan
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan
IPR045058 all species →	Family	GTPase GIMA/IAN/Toc	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903 all species →	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_015559-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.