Gene detail

Detailed information of FUN_015565-T1 in Siderastrea siderea

Genomic Location: contig_12:12239209...12252471
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_015565-T1

atggcggatgaAATTATTGGAAAACGAGTGCTGTGCGAGGGTTTTAGGGGAGAAATCAAATACGTAGGACCTGTTCCACCCACTTCTGGGGAGTGGTTTGGCATTGAGTGGGATGACCATGATAGAGGAAAACATGATGGAACTCATGAAGGAATCAAGTACTTTGAGTGCAGTCATCCTAAAAGTGGCTCCTTTGTAAGACCAAAGAAAGTGGACTTTGGAATCAACATAATTGAAGCACTTAAGCAGCGTTATGGACAAGGTGCTGATGGCATCAACGAGGATGACATGTTTATTGTCAGTggaaaaaacaagaagaaggcTGTAGAAATGGTTGGAGCAGATTCCATTCAGGAAAAGCAAAGTAACTACCAAGAACTGAAAGAAGTTAGCTTAAGAGGCATGGCAGTGAATGGACCTGATAAAGATCATCACTTTAGCGCAGTTGCACCATATATATCAGAGCTTGACCTTTCTAAAGCTCTTCTGTCATCTTGGAGTGATGTGGCATTAATTACAAGGGATCTGCAACATCTGCAAGTGCTTAATTTGTCGGAGAATTTACTCAAACTACCAAGTGTTCCAGAACAGCTGTTGTCTTCATTTACAACAATATCAGTCATATTTCTCAACAGAATGCGACTTTGTTGGGAGGAGGTAGAGGATATTGTCAGTATGATGCCCTCCCTTAAAGAACTACATGTTTGTCATAACTGCCTAAAAAATCTCAGACGAAAAGATGGCCAAGTTGATAAACTGCAGGGACTCCAAAATATAACACTTCTCAACTTACAAGGAAACCAGTTGTCAGAGTGGACAACAGTTTTAAGACTAGGTCACTTACCACAACTCAATCATCTAATTTTGAATGATAATGGCATAACTAGTGTTGAATTACAAAATAAAGTGCAAGGTGAACAAAGTAGCAAGCCTCTCTTCCCAGCATTGCAAACTCTTTCCCTCAGCAAAAACAGAATAAGTGAGATTCAAAGTATTAATGAGTTAAACCATCTTCCGTCTCTAAACGAGCTGCGGTTTGCTGGCAATCCTCTATTCCAAGAGGAAACTACTTTTGCTAGTCGTCAGGAACTGTTGGCTCGCCTTCCTTCTTTAACTTCTCTTAATGGAAGCATGGTTAATCCAAAAGAGAGAGAGACGGCAGAGAGAGCTTATCTAAAGAAGTATGCTCAGGCATGGGTTAATGCCGGTGGCAGTGCTGGTAATGGACAAACCAGCTCACTGAAGCCTGCATTTGTGGAGTTACATCCCAGATATGAGCAACTTGTTAAAGTTCATGGAGTTCCTCCGGAAGCCGAACGCAGTCAAAGTACATCAAAAACGTTGAAAGATTCCTTGATTTCTGTGACGATCACGTGCCCTGATGCTCTGGACAAGAAATCTGTTACAAGAAAGTTACCAGGGACTATGACAATAGGAAAACTTAAAGGATTACTTTATCGAGTGTTCAAGGTGGATAGCTCAGACCAAAGATTGTCCTCTGTGGATAGCAAGCTTGGTCGAGAAGTTGAGTTGGACGATGATTTACggcaacttacattttattccaTACAAAGTGGCGACACTATTTACCTTCGCTGGTGATTCAAGTTTCAAACGCTTTCTACCGAAACAGCGGTTCCCTTCAGTGACAGGGCTGTTCGTCGTACCTTTAAGGGTTGAAATTTGAAGTTTGGTACCTCTTAGGGTGTTGACATCCGAAAGTGACCGTCCTGAGAATTGTCCCAGAACCTTATTTGTTAGGAAAGGAAAAGTCTGTAACTACCTTTTCTGTACGTAGAAAGTATGACTAAGTCATGCACAGATCATATGGGAACAGGTCGCTATAAGAGTGATCCTCATGGGCCATTCATTGGTTAACAGCAGCTTAGGAGAATGGCGAAGAGCCCGCTGCTACATTATGGTGTTAAAAGGAGATGTTGATACACGATTTCTTGAAGGAGAGGACATCATTGTCACTGATCTCTCCAATTATACTATCTCAAAACTGTTCTAGACTCGGACAGCAGCAGTGTGTATGAAAACTCCTGCCAGTAGATTAGGTTCTTGAAACTGGTTCAATGAGTGCAATGCTCGGCATCGACAAACTGGAGCGGGTTACTCGCACAATCATGCACGTCTTGGGTAGCAACAACTTCAAGTCTGGTGCTCATAAGCTGGTGCGTGTCGTTAAGACGACAGACTCTGCCGACCGATTTTCGTGTTTTTAGCTCCctgtgtttAAAGGCGCCCCTATTTGGGTCTCAATGCAAGCGGCCAAGACACCAGCTTTTGTCACTCGCTTAAAACAGTTACACACTGGCGGAACCTAAACAAGAGAGCTTCCTCGCAGGCTTAGCCATCATTGATTAAAACTGCTGAAAATTAAACAGACAATAAACAGTCTATCCTTGTTTTATTAAAGAAACCTTAAGAGTTTCCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14560 all species →	Ubiquitin_2	Ubiquitin-like domain	Domain	Interproscan
PF01302 all species →	CAP_GLY	CAP-Gly domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR044079 all species →	Domain	TBCE, ubiquitin-like (Ubl) domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036859 all species →	Homologous_superfamily	CAP Gly-rich domain superfamily	Interproscan
IPR000938 all species →	Domain	CAP Gly-rich domain	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15454 all species →	NISCHARIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21768	TBCE; tubulin-specific chaperone E	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.