Detailed information of FUN_015606-T1 in Siderastrea siderea

Genomic Location: contig_12:12707624...12721380
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009415 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07163
all species →		Pex26Pex26 proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010797
all species →		FamilyPeroxisome assembly protein 26Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16262
all species →		PEROXISOME ASSEMBLY PROTEIN 26Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005778
all species →		Cellular Componentperoxisomal membraneInterproscan
GO:0044877
all species →		Molecular Functionprotein-containing complex bindingInterproscan
GO:0045046
all species →		Biological Processprotein import into peroxisome membraneInterproscan
GO:0005777
all species →		Cellular ComponentperoxisomeInterproscan
GO:0016558
all species →		Biological Processprotein import into peroxisome matrixInterproscan
GO:0051117
all species →		Molecular FunctionATPase bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_015606-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015606-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
11.1Max TPM
0.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 1 0.25 4.90
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 6.84 7.80
unannotated 1 1 8.70 8.70
live coral tissue/skeleton 1 1 11.12 11.12

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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